View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18367_low_2 (Length: 733)

Name: NF18367_low_2
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18367_low_2
NF18367_low_2
[»] chr1 (29 HSPs)
chr1 (18-715)||(7740480-7741166)
chr1 (18-134)||(15581519-15581627)
chr1 (18-132)||(50678203-50678314)
chr1 (298-459)||(9474815-9474976)
chr1 (336-459)||(50590977-50591100)
chr1 (18-134)||(42365839-42365943)
chr1 (287-459)||(43132-43304)
chr1 (18-69)||(16302775-16302826)
chr1 (277-460)||(32813246-32813429)
chr1 (295-429)||(41758835-41758969)
chr1 (336-418)||(44332348-44332430)
chr1 (318-435)||(13414785-13414902)
chr1 (298-459)||(47452259-47452420)
chr1 (97-134)||(48046405-48046442)
chr1 (336-460)||(5958977-5959101)
chr1 (295-459)||(27564671-27564835)
chr1 (34-132)||(34969739-34969825)
chr1 (18-107)||(41404048-41404129)
chr1 (299-462)||(37926378-37926541)
chr1 (336-459)||(41608470-41608593)
chr1 (299-418)||(45044500-45044619)
chr1 (336-459)||(47748443-47748565)
chr1 (295-460)||(2581914-2582079)
chr1 (316-461)||(51898640-51898785)
chr1 (18-69)||(42934226-42934280)
chr1 (149-213)||(46205370-46205434)
chr1 (336-458)||(44453980-44454102)
chr1 (282-460)||(49811450-49811628)
chr1 (295-460)||(38632257-38632422)
[»] chr3 (39 HSPs)
chr3 (18-134)||(27011134-27011242)
chr3 (277-461)||(35536624-35536808)
chr3 (336-463)||(8956758-8956885)
chr3 (277-459)||(14623757-14623939)
chr3 (299-461)||(25395274-25395435)
chr3 (341-438)||(13898037-13898134)
chr3 (341-463)||(45320366-45320488)
chr3 (309-418)||(1758407-1758515)
chr3 (277-454)||(30801651-30801828)
chr3 (18-134)||(39439928-39440041)
chr3 (316-460)||(41189721-41189865)
chr3 (295-459)||(53982011-53982175)
chr3 (83-134)||(32278316-32278367)
chr3 (34-131)||(44713184-44713273)
chr3 (336-459)||(45058530-45058652)
chr3 (295-460)||(11347858-11348023)
chr3 (277-459)||(8076393-8076575)
chr3 (354-460)||(33118846-33118952)
chr3 (336-461)||(24699931-24700056)
chr3 (97-134)||(25045315-25045352)
chr3 (342-459)||(26141515-26141632)
chr3 (295-460)||(49607413-49607578)
chr3 (295-459)||(33644200-33644364)
chr3 (355-459)||(51419356-51419460)
chr3 (389-460)||(35965804-35965875)
chr3 (299-461)||(17470403-17470565)
chr3 (295-429)||(31456719-31456853)
chr3 (336-418)||(36331306-36331388)
chr3 (97-134)||(2230242-2230279)
chr3 (355-460)||(54868891-54868996)
chr3 (149-213)||(52286126-52286190)
chr3 (94-133)||(23407925-23407964)
chr3 (18-134)||(42029353-42029466)
chr3 (342-460)||(11907370-11907488)
chr3 (336-418)||(41080749-41080830)
chr3 (287-432)||(9563026-9563171)
chr3 (391-460)||(11095385-11095454)
chr3 (299-460)||(35093584-35093745)
chr3 (336-437)||(42823133-42823234)
[»] chr6 (17 HSPs)
chr6 (277-459)||(31952948-31953130)
chr6 (344-455)||(9379697-9379808)
chr6 (341-460)||(12732481-12732600)
chr6 (295-462)||(11427613-11427782)
chr6 (295-452)||(32869685-32869842)
chr6 (336-460)||(15990019-15990143)
chr6 (336-460)||(30341337-30341461)
chr6 (336-459)||(15508001-15508124)
chr6 (299-438)||(28536428-28536565)
chr6 (316-459)||(17598554-17598697)
chr6 (277-463)||(31976244-31976430)
chr6 (336-429)||(4231578-4231671)
chr6 (355-437)||(23128123-23128205)
chr6 (170-216)||(33870203-33870249)
chr6 (299-454)||(22880598-22880753)
chr6 (287-460)||(6209394-6209566)
chr6 (295-460)||(15832576-15832741)
[»] chr2 (35 HSPs)
chr2 (315-459)||(17819960-17820104)
chr2 (295-459)||(13438343-13438507)
chr2 (336-459)||(38732354-38732477)
chr2 (293-460)||(9058479-9058646)
chr2 (295-461)||(36168834-36169000)
chr2 (295-460)||(10249318-10249483)
chr2 (295-463)||(28863451-28863619)
chr2 (336-460)||(45097712-45097836)
chr2 (277-460)||(20700814-20700997)
chr2 (298-461)||(32505587-32505750)
chr2 (336-459)||(43490121-43490244)
chr2 (295-461)||(7465671-7465837)
chr2 (277-459)||(40613820-40614002)
chr2 (342-460)||(42257192-42257310)
chr2 (18-134)||(7444745-7444858)
chr2 (344-460)||(15428725-15428841)
chr2 (87-134)||(10354208-10354255)
chr2 (299-454)||(19930760-19930915)
chr2 (336-438)||(2997464-2997566)
chr2 (391-461)||(5574520-5574590)
chr2 (97-134)||(6476769-6476806)
chr2 (299-460)||(33436040-33436201)
chr2 (336-460)||(26891481-26891605)
chr2 (18-69)||(28219028-28219079)
chr2 (295-461)||(2533122-2533287)
chr2 (83-133)||(28199344-28199393)
chr2 (299-460)||(38273083-38273243)
chr2 (295-459)||(17473020-17473184)
chr2 (379-463)||(33436207-33436291)
chr2 (355-459)||(40701478-40701582)
chr2 (97-132)||(18000080-18000115)
chr2 (97-132)||(44246301-44246336)
chr2 (342-416)||(3737986-3738060)
chr2 (336-418)||(13365394-13365476)
chr2 (391-460)||(30915462-30915531)
[»] scaffold0022 (2 HSPs)
scaffold0022 (18-134)||(44187-44300)
scaffold0022 (18-134)||(77908-78021)
[»] chr8 (28 HSPs)
chr8 (336-460)||(16056378-16056502)
chr8 (18-134)||(42025418-42025526)
chr8 (336-461)||(17443823-17443948)
chr8 (299-459)||(12831047-12831207)
chr8 (295-454)||(5957835-5957994)
chr8 (276-460)||(10284548-10284732)
chr8 (336-460)||(16383376-16383500)
chr8 (336-460)||(24307770-24307894)
chr8 (295-459)||(34012232-34012396)
chr8 (336-459)||(30479451-30479574)
chr8 (295-452)||(14547929-14548086)
chr8 (18-134)||(38679689-38679802)
chr8 (336-460)||(15258906-15259030)
chr8 (18-133)||(34924810-34924922)
chr8 (18-134)||(14112406-14112520)
chr8 (295-459)||(504057-504221)
chr8 (355-459)||(15197333-15197437)
chr8 (295-459)||(23122533-23122697)
chr8 (336-460)||(34307215-34307339)
chr8 (316-463)||(37038475-37038622)
chr8 (297-459)||(1179878-1180040)
chr8 (378-460)||(24307628-24307710)
chr8 (277-407)||(42354506-42354636)
chr8 (336-460)||(42221514-42221638)
chr8 (336-463)||(32032721-32032847)
chr8 (336-459)||(40423920-40424043)
chr8 (389-459)||(20074964-20075034)
chr8 (277-418)||(8841350-8841491)
[»] chr7 (36 HSPs)
chr7 (336-459)||(32564403-32564526)
chr7 (292-466)||(18207173-18207346)
chr7 (295-460)||(8080319-8080484)
chr7 (72-134)||(36657717-36657779)
chr7 (282-430)||(16374747-16374895)
chr7 (277-461)||(46033719-46033903)
chr7 (336-463)||(22343357-22343484)
chr7 (18-134)||(23417284-23417387)
chr7 (355-462)||(36361909-36362016)
chr7 (336-459)||(38267040-38267163)
chr7 (336-463)||(41915737-41915864)
chr7 (336-462)||(26296641-26296767)
chr7 (295-373)||(41423768-41423846)
chr7 (83-132)||(19625367-19625416)
chr7 (282-459)||(39255847-39256023)
chr7 (299-459)||(4999454-4999614)
chr7 (336-460)||(36208172-36208296)
chr7 (355-462)||(36362023-36362130)
chr7 (277-459)||(21234401-21234583)
chr7 (297-454)||(3784000-3784157)
chr7 (299-460)||(19436127-19436288)
chr7 (295-459)||(19329842-19330006)
chr7 (295-454)||(32951429-32951588)
chr7 (292-459)||(35137533-35137700)
chr7 (336-459)||(40846090-40846213)
chr7 (369-463)||(42972955-42973048)
chr7 (149-213)||(25029729-25029793)
chr7 (336-460)||(35468832-35468956)
chr7 (344-460)||(38044196-38044312)
chr7 (18-69)||(5925199-5925250)
chr7 (30-69)||(29428919-29428958)
chr7 (355-458)||(35522877-35522980)
chr7 (355-460)||(7389388-7389493)
chr7 (336-429)||(8238243-8238336)
chr7 (24-69)||(12633429-12633474)
chr7 (370-459)||(46374813-46374902)
[»] chr4 (45 HSPs)
chr4 (18-133)||(3121182-3121289)
chr4 (138-260)||(18895213-18895337)
chr4 (19-131)||(35292001-35292105)
chr4 (299-460)||(47104543-47104704)
chr4 (295-460)||(48182985-48183150)
chr4 (319-459)||(8343123-8343263)
chr4 (30-131)||(48084633-48084726)
chr4 (277-460)||(50052346-50052529)
chr4 (295-429)||(24995043-24995177)
chr4 (18-134)||(41223730-41223838)
chr4 (350-459)||(29535377-29535485)
chr4 (18-128)||(50859126-50859228)
chr4 (309-460)||(480397-480548)
chr4 (336-459)||(11511439-11511562)
chr4 (336-462)||(28480245-28480371)
chr4 (336-462)||(28481120-28481246)
chr4 (336-462)||(28481995-28482121)
chr4 (18-134)||(35033885-35033998)
chr4 (336-461)||(47986206-47986331)
chr4 (336-460)||(19670693-19670817)
chr4 (277-460)||(29239885-29240068)
chr4 (18-69)||(46944056-46944107)
chr4 (336-463)||(50813869-50813996)
chr4 (336-438)||(17983720-17983822)
chr4 (336-429)||(29589717-29589810)
chr4 (344-429)||(29977915-29978000)
chr4 (299-459)||(6034044-6034204)
chr4 (336-460)||(29547936-29548060)
chr4 (295-459)||(41236347-41236511)
chr4 (295-459)||(54473469-54473633)
chr4 (336-460)||(55475190-55475314)
chr4 (83-126)||(13779289-13779332)
chr4 (18-69)||(22405046-22405097)
chr4 (341-460)||(32766957-32767076)
chr4 (309-460)||(48647676-48647827)
chr4 (350-415)||(18769153-18769218)
chr4 (18-63)||(31227714-31227759)
chr4 (355-459)||(31910192-31910296)
chr4 (336-459)||(55079690-55079814)
chr4 (18-69)||(4292708-4292759)
chr4 (18-69)||(21263651-21263702)
chr4 (297-432)||(23608262-23608397)
chr4 (31-69)||(4342109-4342147)
chr4 (350-415)||(18769038-18769103)
chr4 (336-461)||(44536723-44536847)
[»] chr5 (26 HSPs)
chr5 (277-460)||(31008987-31009170)
chr5 (18-134)||(11617182-11617295)
chr5 (295-459)||(14831814-14831978)
chr5 (316-459)||(35943849-35943992)
chr5 (336-462)||(2252145-2252271)
chr5 (295-460)||(15409546-15409711)
chr5 (341-438)||(16327922-16328019)
chr5 (282-459)||(33825247-33825424)
chr5 (336-460)||(3921242-3921366)
chr5 (295-459)||(33149574-33149738)
chr5 (18-69)||(7506052-7506103)
chr5 (295-454)||(18520820-18520979)
chr5 (18-134)||(4943475-4943588)
chr5 (336-461)||(6679696-6679821)
chr5 (355-459)||(28177775-28177879)
chr5 (299-459)||(26720516-26720676)
chr5 (299-459)||(26990265-26990425)
chr5 (295-461)||(2740272-2740438)
chr5 (352-410)||(25831334-25831392)
chr5 (100-134)||(30084858-30084892)
chr5 (342-460)||(38296202-38296320)
chr5 (299-452)||(13811659-13811812)
chr5 (295-460)||(36732878-36733043)
chr5 (316-459)||(35785199-35785342)
chr5 (299-460)||(9603812-9603973)
chr5 (97-134)||(41483507-41483544)
[»] scaffold0039 (2 HSPs)
scaffold0039 (18-67)||(56928-56977)
scaffold0039 (97-134)||(56864-56901)
[»] scaffold0110 (1 HSPs)
scaffold0110 (32-134)||(38650-38739)
[»] scaffold0127 (1 HSPs)
scaffold0127 (18-107)||(30206-30287)
[»] scaffold0321 (1 HSPs)
scaffold0321 (391-460)||(10141-10210)
[»] scaffold0224 (1 HSPs)
scaffold0224 (18-69)||(12491-12545)
[»] scaffold0018 (1 HSPs)
scaffold0018 (341-429)||(152528-152616)
[»] scaffold0227 (1 HSPs)
scaffold0227 (18-69)||(259-310)


Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 18 - 715
Target Start/End: Complemental strand, 7741166 - 7740480
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||        ||||||| ||||||||||||||||||||||||||||||||    
T  7741166 ccatcacactctattccattccatttattttttacaaaactaaacaatggaa--------catggttacatcccactctattccattccaccactctcca 7741075  T
Q  118 tcaatccaaacatagccgaagaggtgcactctggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgccaca 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7741074 tcaatccaaacatagccgaagaggtgcactctagctattttttaattccttttcaatttctaattgtcgccactttttcaccatattctcaaatgccaca 7740975  T
Q  218 aaattgtgtgaggcatgttgtattttctgcaatctctcccaaaacaccaatattggtagggaagatgtcacatggataccctttattctcgtacatcttt 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7740974 aaattgtgtgaggcatgttgtattttgtgcaatctctcccaaaacaccaatattagtagggaagatgtcacatggataccctttattctcgtacatcttt 7740875  T
Q  318 gtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtca 417  Q
    |||||  |||||||||| |||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7740874 gtacatcccatgcaacaggaagagagaagaggagatgaaaaagaaaatatatttgtgtggggtccacatagccacgtgtcatatttttatgtaggtgtca 7740775  T
Q  418 atggatgtattgtcacataagattgtcaatgtatcataactctattggtagcaacgtccaaaaataagtatttagtataggtacaattggcagcaagatc 517  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  7740774 atggatgtattgtcacataaggttgtcaatgtatcataactctattagtagcaacgttcaaatataagtatttagtataggtacaattggcagcaagatc 7740675  T
Q  518 cctattttgcattttggttcgtgaccaattgtttcaaacttcaaagtgtactgtttagcaacgtcaattacgcagttggttatatgtaatgaaatgatct 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7740674 cctattttgcattttggttcgtgaccaattgtttcaaacttcaaagtgtgctgtttagcaacgtcaattacgcagttggttatttgtaatgaaatgatct 7740575  T
Q  618 caaccatcatctaaaaagataaaattaaggccaaaaaacatgtacaaaatcatatataatatttttaatacaacaacaataactaagttttatcccac 715  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  7740574 caaccatcatctaaaatgataaaattaaggccaaaaaacatgtacaaaatcatatataatatttttaataca---acaataactaaattttatcccac 7740480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 15581627 - 15581519
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||     ||| |  ||||||||| ||||||||||| |||||||||    
T  15581627 ccatcacactccattccattccatttcttttttacaaaaccaaacaatgga---atg-----tggatatatcccactccattccattccatcactctcca 15581536  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  15581535 tcaatccaaacatagcc 15581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 50678203 - 50678314
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactc-----tattccattccaccact 112  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||        ||||||||||||||||||||||||      ||||||||||| ||||    
T  50678203 ccatcacactccattccattccattccttttttacaaaaccaaaca--------atggaacatggttccatcccactcaatttcattccattccatcact 50678294  T
Q  113 ctccatcaatccaaacatag 132  Q
    ||||||||||||||||||||    
T  50678295 ctccatcaatccaaacatag 50678314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 459
Target Start/End: Original strand, 9474815 - 9474976
Alignment:
Q  298 ctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtc 397  Q
    |||||||||| |||| | |||||||  |||||||  | |||| |||||||| |||  ||||||||| | |||||||| ||||||||| |  | |||||||    
T  9474815 ctttattctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtc 9474914  T
Q  398 atatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    | |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| ||||    
T  9474915 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 50590977 - 50591100
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  50590977 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 50591076  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  50591077 aagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 42365943 - 42365839
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||  |       |||||||||||||||||     || ||||||||||| |||||||||    
T  42365943 ccatcacactccattccattccattcattttttataaaaccaaaaca-------atggaacatggttccat-----tccattccattccatcactctcca 42365856  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  42365855 tcaatccaaacatagcc 42365839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 459
Target Start/End: Complemental strand, 43304 - 43132
Alignment:
Q  287 acatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacat 386  Q
    |||| |||||||||||||||  ||||   |||||||| |||||||  |  ||| |||| ||| |||  ||||||||| | || ||||| || |||||| |    
T  43304 acatagataccctttattcttatacactcttgtacaccccatgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgcggagtccacgt 43205  T
Q  387 agccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
      | |||||||| |||||| |||||||||||| |||||||||||| | ||||| |||| ||||||||| ||||    
T  43204 gactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 16302775 - 16302826
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  16302775 ccatcacactccattccattccattccttttttacaaaaccaaacaatggaa 16302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 32813429 - 32813246
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||| | |||| | |||||||| |||| ||  | |||| |||||||| |||  ||||||||| | || ||||| |    
T  32813429 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 32813330  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||  |  |||||||||| |||||| ||||||||| || || ||||||| ||| ||||  |||| |||||||||||||||    
T  32813329 gggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 32813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 41758969 - 41758835
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | |||||||| ||||||||  |  | ||||    
T  41758969 accctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgactacgt 41758870  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| |||||| ||||| |||||| || |||||||    
T  41758869 gtcagatttttgtgtggttgtcaaagggtgtattg 41758835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 44332348 - 44332430
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||||| |  ||||| ||||| |||||||||||||||||||    
T  44332348 gaagagagaagagaagaagaaagagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaa 44332430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 13414902 - 13414785
Alignment:
Q  318 gtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtca 417  Q
    ||||||||||||||  | |||| |||||||  | |  ||||||||||| || ||||||||||||||| |  | |||||| | |||||| |||||||||||    
T  13414902 gtacactccatgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtca 13414803  T
Q  418 atggatgtattgtcacat 435  Q
    | || |||||||||||||    
T  13414802 aagggtgtattgtcacat 13414785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 459
Target Start/End: Original strand, 47452259 - 47452420
Alignment:
Q  298 ctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtc 397  Q
    |||||||| | |||||| |||||||| |||||||| | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||||     
T  47452259 ctttattcccatacatccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtt 47452358  T
Q  398 atatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    | |||||| |||||||||||| || ||||||  ||| ||||  |||| ||||||||| ||||    
T  47452359 agatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 48046442 - 48046405
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48046442 attccattccaccactctccatcaatccaaacatagcc 48046405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 5958977 - 5959101
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| ||  |||| ||||| |||||| ||||||||||||  | ||||||| ||| |    
T  5958977 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccactt 5959076  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  5959077 aagggtgtttatgtatcataactct 5959101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 27564671 - 27564835
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |    ||||    
T  27564671 accctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgt 27564770  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  27564771 gtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 34969825 - 34969739
Alignment:
Q  34 cattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatag 132  Q
    ||||||||| ||||||||||||| ||||||||||||       |||||||| |||||||||| |||||||     ||||||||||||||||||||||||    
T  34969825 cattccattcattttttacaaaatcaaacaatggaa-------acatggtttcatcccactccattccat-----cactctccatcaatccaaacatag 34969739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 41404129 - 41404048
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 107  Q
    |||||||| || |||||||||||||  |||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||    
T  41404129 ccatcacattccattccattccattatttttttacaaaaccaaacaat--------ggaacatggctccatcccactccattccattcca 41404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 299 - 462
Target Start/End: Original strand, 37926378 - 37926541
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||| | |||||| |||||||| |||| ||  | |||| ||||||||||||  ||||||||| | |  ||||  ||| ||||  | |||||||||||    
T  37926378 tttattcacatacatccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtacttgtacgggatccatgtggccacgtgtca 37926477  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctat 462  Q
     |||||||||||||||| ||  ||||||||| ||| |||   | || |||||||||||||||||    
T  37926478 gatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactctat 37926541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 41608470 - 41608593
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||  |||||||| || ||||| ||||| |||||| |||| ||||||| || ||||||| ||| |    
T  41608470 gaagagagaagagaagaagaaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacct 41608569  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  41608570 aaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 45044500 - 45044619
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | |||||||| |||| ||  | |||| ||||||||||||  ||||||||||| |||||||| ||||||||  | || || |||||    
T  45044500 tttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgtttgtgcggggtccatgtggctacatgtca 45044599  T
Q  399 tatttttatgtgggtgtcaa 418  Q
     |||||| | ||||||||||    
T  45044600 gatttttgtatgggtgtcaa 45044619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 47748565 - 47748443
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| |||  ||||| ||| |||| || ||||| ||||| |||||||| |||||||||| || ||||||| ||| |    
T  47748565 gaagagagaagagaagaagaaagagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaa-gggtgtattgccacct 47748467  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  | |  ||||||||||||||    
T  47748466 aagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 2582079 - 2581914
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||  |||| | ||||||||  |||| |  | |||| |||||||| |||  ||| ||||| | || ||||| ||||||||| |  | ||||    
T  2582079 accctttattctaatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgt 2581980  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  2581979 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 461
Target Start/End: Original strand, 51898640 - 51898785
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||| |||||||  | |||| |||||||| ||| |||| ||||| | || ||||| ||| ||||| |  | |||||||| |||||| |||||||||    
T  51898640 ttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgt 51898739  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    ||| || ||||||| ||| |||   |||| ||||||||| ||||||    
T  51898740 caaagggtgtattgccacctaaagatgtctatgtatcattactcta 51898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 42934280 - 42934226
Alignment:
Q  18 ccatcacactctattccattccatt---tattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| |||||||||||||   | |||||||||||||||||||||||||    
T  42934280 ccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 42934226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 46205434 - 46205370
Alignment:
Q  149 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 213  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  46205434 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 46205370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 458
Target Start/End: Complemental strand, 44454102 - 44453980
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||  ||| |||||| ||| | || ||||||||| ||||| || |||| ||||| |||||| ||||||| ||||  ||||||||| ||| |    
T  44454102 gaagagagaagatgagaggaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccactt 44454003  T
Q  436 aagattgtcaatgtatcataact 458  Q
    ||   |||| |||||||||||||    
T  44454002 aaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 460
Target Start/End: Original strand, 49811450 - 49811628
Alignment:
Q  282 atgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtc 381  Q
    |||| |||| || ||||||||||||| |||| | |||| |||  ||| ||  | |||| |||||||| |||  ||||||||| | || ||||| || |||    
T  49811450 atgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggagtc 49811549  T
Q  382 cacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     | || || |||||||| |||||| ||||| ||||||  | ||||||||||| ||||  |||| || ||||||||||||    
T  49811550 tatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactct 49811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 38632257 - 38632422
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||| ||| | || ||||| ||||||||| |  | ||||    
T  38632257 accctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgt 38632356  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| ||||| ||| ||  | ||||||| ||| ||||  |||| ||||||||| |||||    
T  38632357 gtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 27011242 - 27011134
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||        |||||||||||||||||| ||||||||||| |||||||||    
T  27011242 ccatcacactccattccattccattccttttttacaaaaccaaacaatggaa--------catggttccatcccactccattccattccatcactctcca 27011151  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  27011150 tcaatccaaacatagcc 27011134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 277 - 461
Target Start/End: Complemental strand, 35536808 - 35536624
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | || ||||| |||||||  | |||| |||||||||||||||||||| || | || ||||||     
T  35536808 ggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgta 35536709  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
     |||||||||  |||||||||| |||||||||||||||||||  | ||||||| ||||||||  |||| ||||||||| ||||||    
T  35536708 aggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactcta 35536624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 8956885 - 8956758
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||||||||||| || | || ||||||  |||||||||   ||||||||| ||||||||||||||||||| |||||||||| |||||    
T  8956885 gaagagagaagagaagatgaaagaggaagtgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacat 8956786  T
Q  436 aagattgtcaatgtatcataactctatt 463  Q
    |||  |||| ||||||||| ||||||||    
T  8956785 aaggatgtctatgtatcattactctatt 8956758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 14623757 - 14623939
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||||| || |||||  ||||||  |  ||| ||||||||||||||||||||||| | || |||||||    
T  14623757 ggaaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtg 14623856  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||||||   ||| ||||| ||||||||||||||||||| || ||||||| ||| ||||  |||| ||||||||| ||||    
T  14623857 aggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 25395274 - 25395435
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||| ||| ||||||||||||||| ||||| |  |  ||| || |||||||||||||||||||||| ||||||||||||||| | |||||||| |||||    
T  25395274 tttatcctcatacatctttgtacac-ccatgtactagaaagagaaaagagaagatgaaagagaaaatgtgtttgtgtggggtctatatagccacatgtca 25395372  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
     |||||| ||||||| | || |||||||| | ||||||||  |||  |||||||||| |||||    
T  25395373 gatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcatagctcta 25395435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 13898037 - 13898134
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataag 438  Q
    ||||||||||||||||||||||| | || ||||||| |||||||||   ||||||||| ||||||||||||||||||| || ||||||| ||| ||||    
T  13898037 gagaagagaagatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaag 13898134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 463
Target Start/End: Complemental strand, 45320488 - 45320366
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagat 440  Q
    |||||||| |||||||| ||||||| | ||||||||  ||||||||| | |||| ||| |||||| |||| |||| ||||  ||||||||||| |||| |    
T  45320488 gagaagaggagatgaaaaagaaaatgtatttgtgtgaagtccacataactacgtatcagatttttgtgtgagtgttaatgagtgtattgtcacttaaggt 45320389  T
Q  441 tgtcaatgtatcataactctatt 463  Q
    ||||||| || ||||||||||||    
T  45320388 tgtcaatttaacataactctatt 45320366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 309 - 418
Target Start/End: Original strand, 1758407 - 1758515
Alignment:
Q  309 tacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatg 408  Q
    |||| |||||||||| |||||||  | |||| |||||||| |||||||||||||||| ||||||||||| |||||| || |||  ||||| |||||| ||    
T  1758407 tacacctttgtacac-ccatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggagtccacgtaaccatatgtcagatttttgtg 1758505  T
Q  409 tgggtgtcaa 418  Q
    ||||||||||    
T  1758506 tgggtgtcaa 1758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 277 - 454
Target Start/End: Original strand, 30801651 - 30801828
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | |||||||| ||||| |  | |||| |||||||  ||| |||||||||||| || |||||||    
T  30801651 ggaaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgtgtg 30801750  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||| ||  | || |||||||||||| ||||||| |||| || |||||| |||| ||||  |||| |||||||||    
T  30801751 gggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 39439928 - 39440041
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| |||||||||||||  |||||| |||||||||||||||||| |||||    |  | |||  ||| || |||||||||||||||||||||    
T  39439928 ccatcacactccattccattccattctttttttgcaaaaccaaacaatggaa-tatggtt--ttatcccactccattccattccattccaccactctcca 39440024  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  39440025 tcaatccaaacatagcc 39440041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 41189721 - 41189865
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    ||||||||||||| ||  | ||||  ||||||| |||  ||||||||| | || ||||| ||||||||  | ||||||||||| ||||||||||||||||    
T  41189721 ttgtacactccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgt 41189820  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||  ||||||||| ||| ||||  |||  |||||||||||||||    
T  41189821 caaatgatgtattgccacctaaggatgtatatgtatcataactct 41189865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 53982175 - 53982011
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  53982175 accctttattcccatacaaccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 53982076  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| ||||    
T  53982075 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 32278367 - 32278316
Alignment:
Q  83 ttccatcccactctattccattccaccactctccatcaatccaaacatagcc 134  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  32278367 ttccatcccattccattccattccaccactctccatcaatccaaacatagcc 32278316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 44713273 - 44713184
Alignment:
Q  34 cattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 131  Q
    ||||||||| |||||||||||||| |||||||||||   ||     ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  44713273 cattccattaattttttacaaaactaaacaatggaa---tg-----tggctccatccctctccattccattccaccactctccatcaatccaaacata 44713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 45058530 - 45058652
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| |||  ||||| |||||||| || | ||| ||||| ||||||||||||||||||| || ||||||| ||| |    
T  45058530 gaagagagaagagaagaagaaagagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaa-gggtgtattgccacct 45058628  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  45058629 aagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 11347858 - 11348023
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | || ||||| |||| ||  | |||| |||||||| |||  ||||||||| | || || ||  |||||||  | |||||||    
T  11347858 accctttattcccatacacccttatacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgcagggtccatgtggccacgt 11347957  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| ||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  11347958 gtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactct 11348023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 459
Target Start/End: Complemental strand, 8076575 - 8076393
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| ||||  ||||||||| |||||||  | |||| |||||||| ||| |||||||||| | || ||||| |    
T  8076575 ggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcg 8076476  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||||||| |  | |||||| | |||||| |||||||||||| || |||| || ||| ||||  |||  ||||||||| ||||    
T  8076475 gggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 460
Target Start/End: Original strand, 33118846 - 33118952
Alignment:
Q  354 gaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatca 453  Q
    |||||||||| | ||||| || ||| ||||| |  | |||||||| |||||| |||||||||||| || ||||||||||| ||||  |||| ||||||||    
T  33118846 gaaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatca 33118945  T
Q  454 taactct 460  Q
    |||||||    
T  33118946 taactct 33118952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 461
Target Start/End: Original strand, 24699931 - 24700056
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||| |||||||||| | |||||||   |||||||| | |||||||| || |||||||||||||||||||  | ||||||| ||  |    
T  24699931 gaagagagaagaggagaggaaagagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaact 24700030  T
Q  436 aagattgtcaatgtatcataactcta 461  Q
    |||  |||| ||||||||| ||||||    
T  24700031 aaggatgtctatgtatcattactcta 24700056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 25045352 - 25045315
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25045352 attccattccaccactctccatcaatccaaacatagcc 25045315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 26141515 - 26141632
Alignment:
Q  342 agaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagatt 441  Q
    ||||||| |||  ||||||||| | || ||||||||||||||  |  |||||||||| |||||| ||||||||| || || ||||||| ||| ||||  |    
T  26141515 agaagaggagagaaaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 26141614  T
Q  442 gtcaatgtatcataactc 459  Q
    ||| ||||||||||||||    
T  26141615 gtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 49607578 - 49607413
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | ||||||||  ||||||  | |||| || ||||| |||  ||||||||| | || ||||||||| ||||| |  | ||||    
T  49607578 accctttattcccatacacccttgtacacgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgt 49607479  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  49607478 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 49607413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 33644364 - 33644200
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | || ||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  33644364 accctttattcccatacacccttatacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 33644265  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| || ||||||| |||  |||  |||| ||||||||| ||||    
T  33644264 gtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 459
Target Start/End: Original strand, 51419356 - 51419460
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| |||||| |  | ||||||||||| |||||| ||||||||| || |||||||||||||  ||||  |||| |||||||||    
T  51419356 aaagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcat 51419455  T
Q  455 aactc 459  Q
    |||||    
T  51419456 aactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 389 - 460
Target Start/End: Original strand, 35965804 - 35965875
Alignment:
Q  389 ccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||| ||||  |||  ||||||||| |||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactct 35965875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 461
Target Start/End: Complemental strand, 17470565 - 17470403
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| ||||| ||||||||  |||||||  | |||| |||||||  |||  ||||||||| | || ||||||||||||||| |  | ||||||||    
T  17470565 tttattctcatacatatttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtca 17470466  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
     |||||| ||||||||| ||  | ||||||| ||| |||   |||| ||||||||| ||||||    
T  17470465 gatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactcta 17470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 31456853 - 31456719
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | | || | |||||||| |||||||  | |||| || ||||| |||  ||||||||| | || ||||| |||||||||||  | ||||    
T  31456853 accctttattcccatgcacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgt 31456754  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| |||||| |||||||||||| || |||||||    
T  31456753 gtcagatttttgtgtgggtgtcaaagggtgtattg 31456719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 36331306 - 36331388
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| ||||||||||||    
T  36331306 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaa 36331388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 2230242 - 2230279
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2230242 attccattccaccactctccatcaatccaagcatagcc 2230279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 54868891 - 54868996
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||||||||| || | |||||||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| |||||||||    
T  54868891 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 54868990  T
Q  455 aactct 460  Q
     |||||    
T  54868991 tactct 54868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 52286126 - 52286190
Alignment:
Q  149 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 213  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  52286126 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 52286190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 23407964 - 23407925
Alignment:
Q  94 tctattccattccaccactctccatcaatccaaacatagc 133  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  23407964 tctattccattccaccactctctaccaatccaaacatagc 23407925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 42029353 - 42029466
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattc-----cattccaccact 112  Q
    |||||| |||| ||||||||||||   |||||||||||||||||||||||||   ||     ||| |||||||||||| ||||     ||||||||||||    
T  42029353 ccatcatactccattccattccatcccttttttacaaaaccaaacaatggaa---tg-----tggctccatcccactccattccattccattccaccact 42029444  T
Q  113 ctccatcaatccaaacatagcc 134  Q
    | ||| ||||||||||||||||    
T  42029445 caccaccaatccaaacatagcc 42029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 460
Target Start/End: Complemental strand, 11907488 - 11907370
Alignment:
Q  342 agaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagatt 441  Q
    ||||||| |||  ||||||||||| || ||||| |||||||| ||  |||| ||||| |||||| |||| ||||  | |  ||||||||||| ||||  |    
T  11907488 agaagaggagagaaaagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggt 11907389  T
Q  442 gtcaatgtatcataactct 460  Q
    ||| |||||||||||||||    
T  11907388 gtctatgtatcataactct 11907370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 41080830 - 41080749
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    |||| |||||||| |||||||||||||||| || |||||| ||||||||||  |||| | ||| ||||||  |||||||||||    
T  41080830 gaagagagaagaggagatgaaagagaaaatgtgcttgtgt-gggtccacatgaccacatatcagatttttgcgtgggtgtcaa 41080749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 9563171 - 9563026
Alignment:
Q  287 acatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacat 386  Q
    |||| |||||||||||||| | |||| |||||||||   ||||||  | |||| |||||||| |||  | ||||||| | ||||||||  || ||||| |    
T  9563171 acatagataccctttattcccatacacctttgtacaactcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgt 9563072  T
Q  387 agccacgtgtcatatttttatgtgggtgtcaatggatgtattgtca 432  Q
      | |||||||| |||||||| ||| |||||| || ||||||||||    
T  9563071 gactacgtgtcagatttttatatggatgtcaaaggttgtattgtca 9563026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 11095385 - 11095454
Alignment:
Q  391 acgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 11095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 35093745 - 35093584
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| |||||||||   ||||||  | |||| ||||| | |||||| |||||||| | || |||| ||| || |||||  |||| |||||    
T  35093745 tttattctcatacacctttgtacatctcatgcactaggaagagagaaaaaaagatgcaagagaaagtgtgcttgtatggagttcacatgaccacatgtca 35093646  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     ||||||  |||| ||||||  | ||||||||||| |||  ||||| ||||||| |||||||    
T  35093645 gatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactct 35093584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 437
Target Start/End: Complemental strand, 42823234 - 42823133
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||| | |||||||||| |||  || || |||||||| ||  |||| ||||| |||||| |||||||||||| || ||||||  |||||    
T  42823234 gaagagagaagagaataagaaagagaaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacat 42823135  T
Q  436 aa 437  Q
    ||    
T  42823134 aa 42823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 31952948 - 31953130
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||||| || ||||| |||||||  | |||| ||||||||||||||||||||||| | ||||||||||    
T  31952948 ggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtgtg 31953047  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||||||   ||| ||||| ||||||||||||||||||| || ||||||| ||| ||||  |||| || |||||| ||||    
T  31953048 aggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 9379697 - 9379808
Alignment:
Q  344 aagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgt 443  Q
    |||||||||||||||||||||| |||||||||| | ||||||| ||||||||||| |||||| | |||||||||| |||||||||||||  ||||  |||    
T  9379697 aagagaagatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgt 9379796  T
Q  444 caatgtatcata 455  Q
    | ||||||||||    
T  9379797 ctatgtatcata 9379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 341 - 460
Target Start/End: Complemental strand, 12732600 - 12732481
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagat 440  Q
    |||||||| |||||||||||||||| || || |||||| ||||||||||||||||||| |||||| ||||||||||||||  | ||||| ||| |||||     
T  12732600 gagaagaggagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaa 12732501  T
Q  441 tgtcaatgtatcataactct 460  Q
    |||| ||||||||| |||||    
T  12732500 tgtctatgtatcattactct 12732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 462
Target Start/End: Complemental strand, 11427782 - 11427613
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||    
T  11427782 accctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgt 11427683  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataaga--ttgtcaatgtatcataactctat 462  Q
    |||| |||||| |||||||||||| |||||||||| ||| |||||   |||| ||||||||| |||||||    
T  11427682 gtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactctat 11427613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 295 - 452
Target Start/End: Complemental strand, 32869842 - 32869685
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||||| |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  32869842 accctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 32869743  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatc 452  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| |||||||    
T  32869742 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 15990019 - 15990143
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  15990019 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 15990118  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  15990119 aagggtgtttatgtatcataactct 15990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 30341337 - 30341461
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  30341337 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 30341436  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  30341437 aagggtgtttatgtatcataactct 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 15508001 - 15508124
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  15508001 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 15508100  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  15508101 aagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 299 - 438
Target Start/End: Original strand, 28536428 - 28536565
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    |||||| || |||| | |||||||| |||||||  | |||| | ||||||||||| ||||||||| | || |||||||||||||||||  |  |||||||    
T  28536428 tttattttcatacacccttgtacaccccatgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtgtggggtccacatgac--cgtgtca 28536525  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataag 438  Q
     |||||| |||||||||||| || ||||||| ||| ||||    
T  28536526 gatttttgtgtgggtgtcaagggttgtattgccacctaag 28536565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 459
Target Start/End: Complemental strand, 17598697 - 17598554
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | |||||||| |||||| |||||||||    
T  17598697 ttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgt 17598598  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||  ||||||||| ||| ||||  |||| ||||||||| ||||    
T  17598597 caaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 463
Target Start/End: Complemental strand, 31976430 - 31976244
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | |||||||| |||| ||  | |||| |||||||| |||  ||||||||| | || ||||| |    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 31976331  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctatt 463  Q
    |||| ||  |  |||||||||| |||||| ||||||||| || || | ||||| ||| ||||  |||| ||||||||||||||||||    
T  31976330 gggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactctatt 31976244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 4231671 - 4231578
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||||||||| |||||| |||||||| ||| || |||||||    
T  4231671 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattg 4231578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 23128123 - 23128205
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataa 437  Q
    ||||||||| | || ||||||||| ||||| |  | |||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  23128123 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataa 23128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 33870249 - 33870203
Alignment:
Q  170 tcaatttctaattgtggccactttttcaccatattctcaaatgccac 216  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||    
T  33870249 tcaacttctaattgtcgccactttttcaccattttctcaaatgccac 33870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 454
Target Start/End: Original strand, 22880598 - 22880753
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||| | |||| | |||||||| ||||| |  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||||||    
T  22880598 tttattcccatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 22880697  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
     | |||| |||||||||||| || ||||||| ||| ||||  |||| |||||||||    
T  22880698 gaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 460
Target Start/End: Original strand, 6209394 - 6209566
Alignment:
Q  287 acatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacat 386  Q
    |||| |||||||||||||| | ||||||||||||||  |||||||  | |||| |||||||| |||  ||||||||| | || | ||| ||||||||| |    
T  6209394 acatagataccctttattccc-tacatctttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgt 6209492  T
Q  387 agccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
      | ||||| || |||||| |||| |||||||    ||||||| ||| ||||  |||| ||||||||| |||||    
T  6209493 gactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactct 6209566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 15832741 - 15832576
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    |||||||||||   |||| | |||||||| |||||||  | ||||  ||||||| |||  ||||||||||| | ||||||  || ||||| |  | ||||    
T  15832741 accctttattccaatacacccttgtacaccccatgcattaggaagatagaagaggagaaaaaagagaaaatgtatttgtgcaggatccacgtgactacgt 15832642  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| ||||||||||||  ||| ||||||||| |||   |||| ||||||||| |||||    
T  15832641 gtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactct 15832576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 315 - 459
Target Start/End: Original strand, 17819960 - 17820104
Alignment:
Q  315 tttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtg 414  Q
    |||||||||  ||||||  | |||| |||||||| |||||||||||||||| |||||||||||||||||| || |||| ||||| |||||| ||||||||    
T  17819960 tttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtg 17820059  T
Q  415 tcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| || ||||||| ||| ||   ||||| ||||||||||||||    
T  17820060 tcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 13438507 - 13438343
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||||| |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  13438507 accctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 13438408  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| |||||||||||||| ||||  |||| ||||||||| ||||    
T  13438407 gtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 38732477 - 38732354
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| ||  |||| ||||| |||||| |||||||||||| ||||||||||||||||    
T  38732477 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacat 38732378  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  38732377 aagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 293 - 460
Target Start/End: Complemental strand, 9058646 - 9058479
Alignment:
Q  293 ataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccac 392  Q
    ||||||||||||| | ||||   |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| |||||||||||  | ||    
T  9058646 ataccctttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactac 9058547  T
Q  393 gtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  9058546 gtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 461
Target Start/End: Complemental strand, 36169000 - 36168834
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| ||||   |||||||| |||| ||  | |||| ||||| || |||  ||||||||| |||| ||||| ||||||||  | |||||||    
T  36169000 accctttattctcatacactcttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcggggtccatgtggccacgt 36168901  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    |||| |||||| |||||| || || |||||||||||||  ||||  |||| ||||||||||||||||    
T  36168900 gtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactcta 36168834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 10249318 - 10249483
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| || ||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  10249318 accctttattctcatacacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 10249417  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| ||||||||||||  | ||||||||||| ||||  |||| ||||||||| |||||    
T  10249418 gtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 10249483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 463
Target Start/End: Complemental strand, 28863619 - 28863451
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | ||||||||  ||||||  | |||| |||||||| |||| ||||||||| | || ||||| ||||||||| |  | ||||    
T  28863619 accctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 28863520  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctatt 463  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| | ||||||    
T  28863519 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctatt 28863451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 45097712 - 45097836
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| | |||||||||| |||||||||| ||| |    
T  45097712 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacct 45097811  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  45097812 aaggatgtttatgtatcataactct 45097836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 20700997 - 20700814
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| ||| |||||||||| | || || || |    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcg 20700898  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| |  | |||||||| |||||| ||| || ||||| || ||||||| ||||||||  |||| ||||||||| |||||    
T  20700897 gggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 461
Target Start/End: Original strand, 32505587 - 32505750
Alignment:
Q  298 ctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtc 397  Q
    |||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||| ||||| | || ||||| ||||||||| |  | |||||||    
T  32505587 ctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggtccacgtgactacgtgtc 32505686  T
Q  398 atatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    | |||||| ||||||||||||  | ||||||||||| ||||  |||| ||||||||| ||||||    
T  32505687 agatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcta 32505750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 43490244 - 43490121
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||| ||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||||||| |    
T  43490244 gaagagagaagagaagaagaaagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacct 43490145  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  43490144 aagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 295 - 461
Target Start/End: Original strand, 7465671 - 7465837
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | ||||||||  ||||||  | |||| |||||||  |||| ||||||||| | || ||||||||||||||| |  | ||||    
T  7465671 accctttattcccatacacccttgtacacctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggtccacgtgactacgt 7465770  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    |||| |||||| |||||||||||| || ||||||| ||  ||||  |||| ||||||||| ||||||    
T  7465771 gtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcta 7465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 40613820 - 40614002
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||||||||||| | |||| | |||||||| |||| ||  | ||||  |||| || |||  ||||||||| | || ||||| |    
T  40613820 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgcg 40613919  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||||||  | ||||||||||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||||||||    
T  40613920 gggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 342 - 460
Target Start/End: Complemental strand, 42257310 - 42257192
Alignment:
Q  342 agaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagatt 441  Q
    ||||||| |||  ||||||||| | || ||||| ||||||||  | ||||||||||| |||||||||||||||||||  ||||||||| ||| |||   |    
T  42257310 agaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagat 42257211  T
Q  442 gtcaatgtatcataactct 460  Q
    ||| |||||||||||||||    
T  42257210 gtctatgtatcataactct 42257192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 7444745 - 7444858
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | ||| | ||  | |||  ||| || ||||||||||| |||||||||    
T  7444745 ccatcacactccattccattccattcattttttagaaaaccaaacaatggaa-tgtgg-atat-atcccactccattccattccattccatcactctcca 7444841  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||| ||||    
T  7444842 tcaatccaaacaaagcc 7444858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 15428725 - 15428841
Alignment:
Q  344 aagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgt 443  Q
    ||||| |||||||||||||||| |||||| |||||||  |||| ||||| ||||| |||||| |||| |||| || || ||||| | ||||||||  |||    
T  15428725 aagaggagatgaaagagaaaatgtgtttgcgtggggtttacatggccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgt 15428824  T
Q  444 caatgtatcataactct 460  Q
      |||||||||||||||    
T  15428825 ttatgtatcataactct 15428841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 10354255 - 10354208
Alignment:
Q  87 atcccactctattccattccaccactctccatcaatccaaacatagcc 134  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10354255 atcctactccattccattccaccactctccatcaatccaaacatagcc 10354208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 454
Target Start/End: Original strand, 19930760 - 19930915
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||| | |||| | ||||||||  ||||||  | |||| |||||||| |||  ||||||||| | |||||||| |||||||||||  | ||||||||    
T  19930760 tttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacatgactacgtgtca 19930859  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
     |||||| ||||| |||||| || ||||||| ||| ||||  |||| |||||||||    
T  19930860 gatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 2997464 - 2997566
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  2997464 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 2997563  T
Q  436 aag 438  Q
    |||    
T  2997564 aag 2997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 5574520 - 5574590
Alignment:
Q  391 acgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    |||||||| ||||||||||||||||||| || ||||||| ||| ||||| |||| ||||||||| ||||||    
T  5574520 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 5574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 6476806 - 6476769
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6476806 attccattccaccactctccatcaatccaaacatagcc 6476769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 460
Target Start/End: Original strand, 33436040 - 33436201
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | ||||||||  ||||||  | |||| |||||||  ||| |||||||||| | || ||||| ||||||||| |  | |||||| |    
T  33436040 tttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtta 33436139  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  33436140 gatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 26891481 - 26891605
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||||| || ||||  | ||||||| |  |||| ||||| |||||| |||||||||| | || ||||||| ||| |    
T  26891481 gaagagagaagagaagaggaaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacct 26891580  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  || | |||||||||||||||    
T  26891581 aagggtggctatgtatcataactct 26891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 28219079 - 28219028
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  28219079 ccatcacactccattccattccatcccttttttacaaaaccaaacaatggaa 28219028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 461
Target Start/End: Complemental strand, 2533287 - 2533122
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||| ||    |||| |||||||| |||| ||||| ||| | || ||||| |||||| |  | || ||||    
T  2533287 accctttattcccatacacccttgtacaccccatacattgggaagagagaagaggagataaaagaaaaagtgtgcttgtgcggggtctatgtggctacgt 2533188  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    |||| |||||| ||||| |||||| |||||||||| ||| ||||  |||| ||||||||||||||||    
T  2533187 gtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactcta 2533122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 28199344 - 28199393
Alignment:
Q  83 ttccatcccactctattccattccaccactctccatcaatccaaacatagc 133  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  28199344 ttccatcccattccattccattccaccactct-catcaatccaaacatagc 28199393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 460
Target Start/End: Original strand, 38273083 - 38273243
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||||||| |||||| |||| ||  | |||| ||||| || |||  ||||||||| | || | ||| ||||||||  | || ||||||||    
T  38273083 tttattctcatacatctt-gtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgctagtgcggggtccatgtggctacgtgtca 38273181  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     |||||| ||||||||| || || ||||||| ||  ||||| |||| |||||||||||||||    
T  38273182 gatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactct 38273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 17473184 - 17473020
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | ||||||||  ||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||    
T  17473184 accctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgt 17473085  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| || ||||||| ||  ||||  |||| ||||||||| ||||    
T  17473084 gtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 463
Target Start/End: Complemental strand, 33436291 - 33436207
Alignment:
Q  379 gtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctatt 463  Q
    |||||||| | ||||||||| |||||||||||||||||||  | ||||||| ||  ||||  |||| ||||||||| ||||||||    
T  33436291 gtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactctatt 33436207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 40701582 - 40701478
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||||||||| || | |||||||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| |||||||||    
T  40701582 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 40701483  T
Q  455 aactc 459  Q
     ||||    
T  40701482 tactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 18000080 - 18000115
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatag 132  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18000080 attccattccatcactctccatcaatccaaacatag 18000115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 44246336 - 44246301
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatag 132  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44246336 attccattccatcactctccatcaatccaaacatag 44246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 3738060 - 3737986
Alignment:
Q  342 agaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtc 416  Q
    ||||||| ||| |||| ||||||| || ||||| |||||||||||  |||| ||||| |||||| ||||||||||    
T  3738060 agaagaggagaggaaaaagaaaatgtgcttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 13365476 - 13365394
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || | ||| ||||| |||||| ||||||||||||    
T  13365476 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaa 13365394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 30915531 - 30915462
Alignment:
Q  391 acgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| ||||||||||||| ||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  30915531 acgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 44187 - 44300
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |    | |||  ||| || |||||||||||||||||||||    
T  44187 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaa-tatggatc--tatcccactccattccattccattccaccactctcca 44283  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  44284 tcaatccaaacatagcc 44300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 77908 - 78021
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |    | |||  ||| || |||||||||||||||||||||    
T  77908 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaa-tatggatc--tatcccactccattccattccattccaccactctcca 78004  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  78005 tcaatccaaacatagcc 78021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 16056378 - 16056502
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| ||||||||||||||||    
T  16056378 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacat 16056477  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  16056478 aaggatgtttatgtatcataactct 16056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 42025418 - 42025526
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||       |  ||||||||| ||||||||||| |||||||||    
T  42025418 ccatcacactccattcaattccattcattttttacaaaaccaaacaatggaa-tatgga-------tatatcccactccattccattccatcactctcca 42025509  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||| ||||    
T  42025510 tcaatccaaacaaagcc 42025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 17443948 - 17443823
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| ||||||||||||||||||||||| | | ||||||||||||||||||  | || ||||| |||||| |||| |||| ||    ||||||||||| |    
T  17443948 gaagagagaagagaagatgaaagagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacct 17443849  T
Q  436 aagattgtcaatgtatcataactcta 461  Q
    ||| ||||| ||||||||||||||||    
T  17443848 aaggttgtctatgtatcataactcta 17443823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 299 - 459
Target Start/End: Complemental strand, 12831207 - 12831047
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||||||    
T  12831207 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 12831108  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||| |||||||||||| || ||||||||||| ||||  |||| ||||||||| ||||    
T  12831107 gatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 295 - 454
Target Start/End: Complemental strand, 5957994 - 5957835
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | ||||||||  ||||||  | |||| |||||||| ||| |||||||||| | || ||||| ||| ||||| |  | ||||    
T  5957994 accctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcgggatccacgtgactacgt 5957895  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||| |||| |||||||||    
T  5957894 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 276 - 460
Target Start/End: Original strand, 10284548 - 10284732
Alignment:
Q  276 gggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgt 375  Q
    ||||| |||| |||| || ||| ||||||||  |||| | |||||||| |||||||  | |||| |||||||  | | |||||||||| | || |||||     
T  10284548 gggaaaatgttacatagacaccttttattcttatacaaccttgtacaccccatgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgc 10284647  T
Q  376 ggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    ||||||||| |  | |||||||| |||||| |||||||||||| |  ||||||||||| ||||  |||| |||||||||||||||    
T  10284648 ggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactct 10284732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 16383500 - 16383376
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  16383500 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 16383401  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  16383400 aagggtgtttatgtatcataactct 16383376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 24307770 - 24307894
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| | ||| |||||| |||||||||||| |||||||||| ||| |    
T  24307770 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacct 24307869  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  24307870 aagggtgtttatgtatcataactct 24307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 34012232 - 34012396
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    |||||||||||||||||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||    
T  34012232 accctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgt 34012331  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| || ||||||  ||| ||||  |||| ||||||||| ||||    
T  34012332 gtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 30479451 - 30479574
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| | |||||| |||||||| ||||| |||||||||||| |||||| || ||||||| ||| |    
T  30479451 gaagagagaagagaagaagaaagagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacct 30479550  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  30479551 aagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 452
Target Start/End: Complemental strand, 14548086 - 14547929
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||||| |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  14548086 accctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 14547987  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatc 452  Q
    |||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| |||||||    
T  14547986 gtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 38679802 - 38679689
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  |||  |  |  |  ||  |||||| ||||||||||| |||||||||    
T  38679802 ccatcacactccattccattctattcattttttacaaaaccaaacaatggaa-catg--attttatctcactccactccattccattccatcactctcca 38679706  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  38679705 tcaatccaaacatagcc 38679689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 15258906 - 15259030
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||| |||||||||||| || |||||  |||||||| |  |||| ||||| |||||||||||| |||| | |||||||||| ||  |    
T  15258906 gaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatct 15259005  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||| | || |||||||||||||||    
T  15259006 aagagtatctatgtatcataactct 15259030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 34924810 - 34924922
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||| | | ||| | ||  | |||  ||| || ||||||||||| |||||||||    
T  34924810 ccatcacactccattccattccattcattttttacataaccaaacaatggga-tgtgg-atat-atcccactccattccattccattccatcactctcca 34924906  T
Q  118 tcaatccaaacatagc 133  Q
    ||||||||||||||||    
T  34924907 tcaatccaaacatagc 34924922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 14112406 - 14112520
Alignment:
Q  18 ccatcacactctattccattccatttattttttac-aaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcc 116  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||| | | ||| | ||  | |||  ||| || ||||||||||| ||||||||    
T  14112406 ccatcacactctattccattccattcattttttactataaccaaacaatggga-tgtgg-atat-atcccactccattccattccattccatcactctcc 14112502  T
Q  117 atcaatccaaacatagcc 134  Q
    ||||||||||||||||||    
T  14112503 atcaatccaaacatagcc 14112520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 504057 - 504221
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| |||||||  |||  ||||||||  | || ||||| ||||||||| |  | ||||    
T  504057 accctttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggtccacgtgactacgt 504156  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  504157 gtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 15197437 - 15197333
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||||||||| |  | |||||||| |||||| |||||||||||| || ||||||| ||| ||||| |||| |||||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 15197338  T
Q  455 aactc 459  Q
     ||||    
T  15197337 tactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 23122533 - 23122697
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| ||||| || |||  ||||||||| | || || || ||||||||| |  | ||||    
T  23122533 accctttattctcatacacccttgtacaccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggtccacgtgactacgt 23122632  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  23122633 gtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 34307339 - 34307215
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| ||||| || ||  |||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  34307339 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 34307240  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  34307239 aagggtgtttatgtatcataactct 34307215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 37038622 - 37038475
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||| |||||||  | |||| |||||||| ||| |||| ||||| | || ||||| ||| ||||| |  | |||||||| |||||| |||||||||    
T  37038622 ttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgt 37038523  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactctatt 463  Q
    ||| || ||||||| ||| |||   |||| ||||||||| ||||||||    
T  37038522 caaagggtgtattgccacctaaagatgtctatgtatcattactctatt 37038475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 459
Target Start/End: Original strand, 1179878 - 1180040
Alignment:
Q  297 cctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgt 396  Q
    ||||||||| | || ||| |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||  |||||||  | ||||||    
T  1179878 cctttattcccatatatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgt 1179977  T
Q  397 catatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    || |||||| |||||||||||| || ||||||  ||| ||||  |||| ||||||||| ||||    
T  1179978 cagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 24307710 - 24307628
Alignment:
Q  378 ggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||| || ||||| | ||| |||||| ||||||||||||||||||||||| ||| ||||  |||  |||||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactct 24307628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 407
Target Start/End: Original strand, 42354506 - 42354636
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | || ||||| |||||||  | |||| ||||||||||||||||||||||| | || || ||||    
T  42354506 ggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttatgtg 42354605  T
Q  377 gggtccacatagccacgtgtcatatttttat 407  Q
     | |||||||   ||||||||| ||||||||    
T  42354606 agatccacatgaacacgtgtcagatttttat 42354636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 42221638 - 42221514
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||  |||||||||||||| | || |||| ||||||||| ||    |||||||| |||||| |||||||||| | | |||||||||||| |    
T  42221638 gaagagagaagatgagatgaaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacct 42221539  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  ||||||||| |||||    
T  42221538 aaggatgtatatgtatcattactct 42221514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 32032847 - 32032721
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||  |||||||||| | |  |||||  || |||| || ||||| ||||| |||||| ||||| |||||| |||||||||| ||| |    
T  32032847 gaagagagaagagaaggagaaagagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacct 32032749  T
Q  436 aagattgtcaatgtatcataactctatt 463  Q
    |||  |||  ||||||||||||||||||    
T  32032748 aagggtgtttatgtatcataactctatt 32032721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 40423920 - 40424043
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| |||  ||||||||| | || ||||| |||||||||||  | |||||||| |||||| ||||| |||||| || ||||||| ||| |    
T  40423920 gaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacct 40424019  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  | || ||||||||| ||||    
T  40424020 aagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 20074964 - 20075034
Alignment:
Q  389 ccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||||||||| ||||||||||||||||||| |  ||||||| ||| ||||  |||| ||||||||| ||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 418
Target Start/End: Original strand, 8841350 - 8841491
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| ||||   |||||||| |||||||  | |||  |||||||| ||| |||||||||| | || ||||| |    
T  8841350 ggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaagaggagaggaaagagaaagtgtgcttgtgcg 8841449  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    |||||||| |  | |||||| | |||||| ||||||||||||    
T  8841450 gggtccacgtgactacgtgttagatttttgtgtgggtgtcaa 8841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 32564403 - 32564526
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | | |||||| |||||||| |||||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  32564403 gaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 32564502  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||| |||  ||||||||||||||    
T  32564503 aagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 466
Target Start/End: Complemental strand, 18207346 - 18207173
Alignment:
Q  292 gataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagcca 391  Q
    ||||||||||||| || |||| | |||||||||| || ||  | |||| |||||||| |||||||||||||| | || ||||||||||| ||| | ||||    
T  18207346 gataccctttattatcatacacccttgtacactctatccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggggttcacgt-gcca 18207248  T
Q  392 cgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctattggt 466  Q
    ||||| | |||||| | ||||||||||  | ||||||| ||| |||| ||||| ||||||||||||||| |||||    
T  18207247 cgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactcttttggt 18207173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 8080319 - 8080484
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||| | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  8080319 accctttattcccatacacccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 8080418  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||||||| |||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  8080419 gtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 36657717 - 36657779
Alignment:
Q  72 atggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 134  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||    
T  36657717 atggaacatggttccatcccaccccattccattccatcactctccatcaatccaaatatagcc 36657779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 282 - 430
Target Start/End: Original strand, 16374747 - 16374895
Alignment:
Q  282 atgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtc 381  Q
    |||| |||| || ||||||||||||| |||| ||||||||||||||| ||  | |||| ||||| |  |||||||||||||  | || ||||||| | ||    
T  16374747 atgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtgagatc 16374846  T
Q  382 cacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgt 430  Q
    ||| |  |||||||||| |||||| ||||| |||||| |||||||||||    
T  16374847 cacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtattgt 16374895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 277 - 461
Target Start/End: Original strand, 46033719 - 46033903
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | |||||||| |||| ||  | |||  |||||||| |||  |||||||||||||| ||||| |    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaatagagaagaggagagaaaagagaaaatatgcttgtgcg 46033818  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    | || ||  |  |||||||||| |||||||||||||||| || || ||||||| ||| ||||| | || ||||||||||||||||    
T  46033819 gagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactcta 46033903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 22343484 - 22343357
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || | ||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  22343484 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 22343385  T
Q  436 aagattgtcaatgtatcataactctatt 463  Q
    |||  |||  ||||||||||||||||||    
T  22343384 aagggtgtttatgtatcataactctatt 22343357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 23417284 - 23417387
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    |||||| |||| || ||||||||||  |||||||||||||||||||||||||        |||||||||||||||||| |||||||     |||||||||    
T  23417284 ccatcatactccatgccattccattccttttttacaaaaccaaacaatggaa--------catggttccatcccactccattccat-----cactctcca 23417370  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  23417371 tcaatccaaacatagcc 23417387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 462
Target Start/End: Original strand, 36361909 - 36362016
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||||||||||||| |  | |||||||| |||||| |||||||||||| |||||||||| ||| ||||  |||| |||||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcat 36362008  T
Q  455 aactctat 462  Q
     |||||||    
T  36362009 tactctat 36362016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Complemental strand, 38267163 - 38267040
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | |||||||| |||||| |||||||||||| || |||||||||||||    
T  38267163 gaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacat 38267064  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||| ||||||||| ||||    
T  38267063 aagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 41915864 - 41915737
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| ||| |||||||| || ||||||| ||| |    
T  41915864 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacct 41915765  T
Q  436 aagattgtcaatgtatcataactctatt 463  Q
    |||  |||  ||||||||||||||||||    
T  41915764 aagggtgtttatgtatcataactctatt 41915737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 462
Target Start/End: Complemental strand, 26296767 - 26296641
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| |||  |||||||||||  | ||||| |||||||| || ||||||| ||| |||||||||||| ||| || || | ||||||||| |    
T  26296767 gaagagagaagaggagagaaaagagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacct 26296668  T
Q  436 aagattgtcaatgtatcataactctat 462  Q
    |||  |||| |||||||||||||||||    
T  26296667 aaggatgtctatgtatcataactctat 26296641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 41423846 - 41423768
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgt 373  Q
    ||||||||||||| |||| |||||||||| |||||||  | |||| |||||||| ||||||||||||||||||| ||||    
T  41423846 accctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgt 41423768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 19625416 - 19625367
Alignment:
Q  83 ttccatcccactctattccattccaccactctccatcaatccaaacatag 132  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  19625416 ttccatcccattccattccattccaccactctccatcaatccaaacatag 19625367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 459
Target Start/End: Original strand, 39255847 - 39256023
Alignment:
Q  282 atgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtc 381  Q
    |||| |||| || |||||||||| || |||| | ||||||| || || || |  |||| |||||||| |||||||||||||| | |  |||||||| |||    
T  39255847 atgttacatagacaccctttattatcatacacccttgtacattctatccaccgggaagagagaagaggagatgaaagagaaagtgttcttgtgtggagtc 39255946  T
Q  382 cacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    ||| | ||||||||||| |||||| | ||||| ||||  | ||||||| ||| |||| ||||| ||||||||||||||    
T  39255947 cacgt-gccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 299 - 459
Target Start/End: Original strand, 4999454 - 4999614
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||| ||||||||| | |||||||| ||||||||| |  | |||| |||    
T  4999454 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggtccacgtgactacgtatca 4999553  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||| ||||||||||||  | ||||||| ||  ||||  |||| ||||||||| ||||    
T  4999554 gatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 36208296 - 36208172
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||| |||||||||||| || |||||  |||||||| |  |||| |||||  ||||| |||||||||||||| |||||||  ||| |    
T  36208296 gaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacct 36208197  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||| |||||||||||||||    
T  36208196 aagggtgtctatgtatcataactct 36208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 462
Target Start/End: Complemental strand, 36362130 - 36362023
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||||||||||||| |  | |||||||| |||||| |||||||||||| |||||||||  ||| ||||  |||| |||||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcat 36362031  T
Q  455 aactctat 462  Q
     |||||||    
T  36362030 tactctat 36362023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 459
Target Start/End: Complemental strand, 21234583 - 21234401
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||| ||||||||| |||| | |||||||| |||| ||  | |||| ||| | || ||| | |||||||||| || ||||| |    
T  21234583 ggaaaatgttacatagacaccttttattctcatacaccattgtacaccccatacattaggaagagaggaaaggagaggtaagagaaaatgtgcttgtgcg 21234484  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| ||  | || |||||||| |||||| |||| ||||||| || ||||||||||| ||||  |||| ||||||||||||||    
T  21234483 gggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 454
Target Start/End: Complemental strand, 3784157 - 3784000
Alignment:
Q  297 cctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgt 396  Q
    ||||||||| | |||||  |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||||    
T  3784157 cctttattcacatacattcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgt 3784058  T
Q  397 catatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    || |||||| ||||||||||||  ||||||||| ||| ||||  |||| |||||||||    
T  3784057 cagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 460
Target Start/End: Original strand, 19436127 - 19436288
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | |||||||| |||||||  | |||| || |||||||||  ||||||||| | || || || ||| ||||| |  | ||||||||    
T  19436127 tttattctcatacacccttgtacaccccatgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtgactacgtgtca 19436226  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     |||||| ||||||||||||  | ||||||||||| ||||  |||| ||||||||| |||||    
T  19436227 gatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 19330006 - 19329842
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |    ||||    
T  19330006 accctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgt 19329907  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| ||||||||||||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  19329906 gtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 454
Target Start/End: Original strand, 32951429 - 32951588
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    |||| |||||||| |||| | |||||||| ||||| |  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  32951429 accccttattctcatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 32951528  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    || | |||||| ||||| ||| || |||||||||||||  ||||| |||| |||||||||    
T  32951529 gttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 459
Target Start/End: Complemental strand, 35137700 - 35137533
Alignment:
Q  292 gataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagcca 391  Q
    |||||| ||| ||||| |||| | |||||||  |||||||  | |||| |||||||| |||  ||||||||| | |||||||| ||||||||| |  | |    
T  35137700 gataccatttgttctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgacta 35137601  T
Q  392 cgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    ||||| | |||||| |||||||||||| || ||||||| ||| ||||  |||| || |||||| ||||    
T  35137600 cgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 40846090 - 40846213
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | | |||||| |||||||| ||| | || ||| | |||||| ||||| |||||| || ||||||| ||| |    
T  40846090 gaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacct 40846189  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||  ||||||||||||||    
T  40846190 aaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 463
Target Start/End: Original strand, 42972955 - 42973048
Alignment:
Q  369 tttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactctatt 463  Q
    |||||||||||||||  | ||||||||||| | |||| ||||||||| ||||| ||||||| |||||| ||| ||  ||||||||| ||||||||    
T  42972955 tttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaatgg-tgtattgccacataggatagtacatgtatcattactctatt 42973048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 25029729 - 25029793
Alignment:
Q  149 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 213  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  25029729 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 25029793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 35468832 - 35468956
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| | | |||||||||| | ||||||||  |||||||||| | ||| | | | |||||||||||||||||||  ||||||||| ||  |    
T  35468832 gaagagagaagaggataggaaagagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatct 35468931  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||| ||||||||| |||||    
T  35468932 aaggatgtctatgtatcattactct 35468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 38044312 - 38044196
Alignment:
Q  344 aagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgt 443  Q
    ||||||||| |||||||||| | |  ||||| |||||||| || || || ||||| |||||| ||||| |||||| || ||||||| ||| ||||  |||    
T  38044312 aagagaagaagaaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgt 38044213  T
Q  444 caatgtatcataactct 460  Q
      |||||||||||||||    
T  38044212 ttatgtatcataactct 38044196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 5925199 - 5925250
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    |||||| | |||||||||| |||| || ||||||||||||||||||||||||    
T  5925199 ccatcatattctattccataccatatactttttacaaaaccaaacaatggaa 5925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 29428958 - 29428919
Alignment:
Q  30 attccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  29428958 attccattccattcattttttacaaatccaaacaatggaa 29428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 35522980 - 35522877
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||| |||| || ||||||||||| |||||| ||||||||| ||  | ||||||| ||| ||||  |||| |||||||||    
T  35522980 aaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T
Q  455 aact 458  Q
    ||||    
T  35522880 aact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 460
Target Start/End: Complemental strand, 7389493 - 7389388
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||||||||| |  | |||||||| |||||| |||||||||||| |  ||||||| ||| ||||  |||| |||||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 7389394  T
Q  455 aactct 460  Q
     |||||    
T  7389393 tactct 7389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 8238336 - 8238243
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| ||  | || ||||| |||||| |||||||||||| || |||||||    
T  8238336 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattg 8238243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 12633474 - 12633429
Alignment:
Q  24 cactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||    
T  12633474 cactccattccattccattatttgtttacaaaaccaaacaatggaa 12633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 459
Target Start/End: Original strand, 46374813 - 46374902
Alignment:
Q  370 ttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    ||||| ||||||||  | ||||||||||| |||||| ||||||||| || || ||| ||| ||| ||||  |||| ||||||||||||||    
T  46374813 ttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 3121289 - 3121182
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| |||||||||||||  |||||| ||||||||||||||||||         ||||||  ||||||||| |||||||||||||||||||||    
T  3121289 ccatcacactccattccattccattctttttttgcaaaaccaaacaatggaat--------atggttttatcccactccattccattccaccactctcca 3121198  T
Q  118 tcaatccaaacatagc 133  Q
    ||||||||||||||||    
T  3121197 tcaatccaaacatagc 3121182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 18895213 - 18895337
Alignment:
Q  138 gaggtgcactctggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgccac--aaaattgtgtgaggcatgt 235  Q
    |||| |||||||| |||||||| ||||| || ||||  ||||||||| ||||| || ||||||| ||||||||||||||  ||||||||||||| |||||    
T  18895213 gaggcgcactctgactatttttgaattcgttctcaacctctaattgtcgccaccttctcaccatcttctcaaatgccactaaaaattgtgtgagacatgt 18895312  T
Q  236 tgtattttctgcaatctctcccaaa 260  Q
    ||| ||| ||||||| |||||||||    
T  18895313 tgtttttcctgcaatatctcccaaa 18895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 35292105 - 35292001
Alignment:
Q  19 catcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccat 118  Q
    |||||||||| |||||||||||||  |||||| ||||||||||||||||||         ||||||  ||||||||| ||||||||||||||||||||||    
T  35292105 catcacactccattccattccattccttttttgcaaaaccaaacaatggaat--------atggttttatcccactccattccattccaccactctccat 35292014  T
Q  119 caatccaaacata 131  Q
    |||||||||||||    
T  35292013 caatccaaacata 35292001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 47104704 - 47104543
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    |||||||||||||||  | ||||||  ||||||  | |||| |||||||| |||||||||||||| | ||||||||||||||| | | | ||||||||||    
T  47104704 tttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaagtgtgtttgtgtggggtcaataaaaccacgtgtca 47104605  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     |||||| |||||||||||  |  ||||||||||  ||||| |||| || |||||| |||||    
T  47104604 aatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactct 47104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 48182985 - 48183150
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  48182985 accctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 48183084  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  48183085 gtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 459
Target Start/End: Original strand, 8343123 - 8343263
Alignment:
Q  319 tacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaa 418  Q
    ||||||||||| |  | |||| |||||||||||| |||||||||| |||  || || |||||||| || ||||| ||||| |||||||||| ||||||||    
T  8343123 tacactccatgtattaggaagagagaagagaagaagaaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaa 8343222  T
Q  419 tggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||||||| ||| ||||  |||  ||||||||||||||    
T  8343223 aggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 48084726 - 48084633
Alignment:
Q  30 attccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaaca 129  Q
    |||| |||| ||| ||||||||||||||||||||||||||   ||     ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  48084726 attcaattctattaattttttacaaaaccaaacaatggaa---tg-----tggtttcatcccactccattccattccaccactctccatcaatccaaaca 48084635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 277 - 460
Target Start/End: Original strand, 50052346 - 50052529
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||||||||||| | |||| ||||||||||   |||||  | |||| |||||||| ||| |||||||||| | || ||||| |    
T  50052346 ggaaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcg 50052445  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| |  | |||||||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| |||||    
T  50052446 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 24995043 - 24995177
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||||| || ||||| ||||||||| |  | ||||    
T  24995043 accctttattcccatacaccattgtacaccccatgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggtccacgtgactacgt 24995142  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| ||||||||||||||||||| || |||||||    
T  24995143 gtcaaatttttatgtgggtgtcaaagggtgtattg 24995177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 41223730 - 41223838
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||| |   ||     ||| |  ||||||||| ||||||||||| |||||||||    
T  41223730 ccatcacactccattccattccattcattttttacataaccaaacaatggga---tg-----tggatatatcccactccattccattccatcactctcca 41223821  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  41223822 tcaatccaaacatagcc 41223838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 459
Target Start/End: Complemental strand, 29535485 - 29535377
Alignment:
Q  350 agatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgt 449  Q
    |||||||||||||| | |||||||||||| ||||| | |||| ||| ||||||||| ||||| |  |||  ||||||||||||| |||||||||| ||||    
T  29535485 agatgaaagagaaagtgtgtttgtgtgggatccacgtggccatgtg-catatttttgtgtggataccaagagatgtattgtcacctaagattgtctatgt 29535387  T
Q  450 atcataactc 459  Q
    ||||||||||    
T  29535386 atcataactc 29535377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 50859228 - 50859126
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||| ||| |  |||||||||||||||||||||||||        |||| ||||||||||||| |||||||||||||||||| ||    
T  50859228 ccatcacactccattccatcccactctttttttacaaaaccaaacaatggaa--------catgcttccatcccactccattccattccaccactcttca 50859137  T
Q  118 tcaatccaaac 128  Q
    |||||| ||||    
T  50859136 tcaatcaaaac 50859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 309 - 460
Target Start/End: Original strand, 480397 - 480548
Alignment:
Q  309 tacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatg 408  Q
    |||| |||||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||  ||||||||| |  | |||||||| |||||| ||    
T  480397 tacacctttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtg 480496  T
Q  409 tgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||||| || ||||||||||| ||||  |||| ||||||||| |||||    
T  480497 tgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 11511439 - 11511562
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| ||||||||||||  ||||||||| | || ||||| ||||||||| |  | |||||||| ||||||||||||||||||| || ||||||| ||| |    
T  11511439 gaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacct 11511538  T
Q  436 aagattgtcaatgtatcataactc 459  Q
    |||  |||| ||||||||| ||||    
T  11511539 aagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 28480245 - 28480371
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||||||| |||||| | ||||||||||||||||||||  | || ||||| |||||| |||| |||| ||    ||||||||||| |    
T  28480245 gaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacct 28480344  T
Q  436 aagattgtcaatgtatcataactctat 462  Q
    ||| ||||| |||||| ||||||||||    
T  28480345 aaggttgtctatgtattataactctat 28480371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 28481120 - 28481246
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||||||| |||||| | ||||||||||||||||||||  | || ||||| |||||| |||| |||| ||    ||||||||||| |    
T  28481120 gaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacct 28481219  T
Q  436 aagattgtcaatgtatcataactctat 462  Q
    ||| ||||| |||||| ||||||||||    
T  28481220 aaggttgtctatgtattataactctat 28481246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 28481995 - 28482121
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| ||||||| |||||| | ||||||||||||||||||||  | || ||||| |||||| |||| |||| ||    ||||||||||| |    
T  28481995 gaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacct 28482094  T
Q  436 aagattgtcaatgtatcataactctat 462  Q
    ||| ||||| |||||| ||||||||||    
T  28482095 aaggttgtctatgtattataactctat 28482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 35033885 - 35033998
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    |||||||| || |||||||||||||    |||| |||||||||||||||||| | ||  || |  ||||| |||| || |||||||||||||||||||||    
T  35033885 ccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa-tctg--actttattccaacccattccattccattccaccactctcca 35033981  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  35033982 tcaatccaaacatagcc 35033998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 47986331 - 47986206
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||| | |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| ||||| |||||| |||||||||| ||| |    
T  47986331 gaagagagaagagaataagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacct 47986232  T
Q  436 aagattgtcaatgtatcataactcta 461  Q
    |||  |||  ||||||||||||||||    
T  47986231 aagggtgtttatgtatcataactcta 47986206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 19670693 - 19670817
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||| ||||||| || ||||||| ||| |    
T  19670693 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacct 19670792  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  19670793 aagggtgtttatgtatcataactct 19670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 29240068 - 29239885
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||||||||||| | ||||   |||||||| |||||||  | |||| |||||||| ||| |||||||||| | || |||||||    
T  29240068 ggaaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtg 29239969  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| |  | |||||| | |||||| ||||| ||||||  | ||||||| ||| ||||  |||| ||||||||| |||||    
T  29239968 gggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 46944107 - 46944056
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  46944107 ccatcacactccattccattccattcattttttacataaccaaacaatggaa 46944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 463
Target Start/End: Original strand, 50813869 - 50813996
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| ||||| || ||  |||| ||||| |||||| |||||||||||| || ||||||  ||| |    
T  50813869 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacct 50813968  T
Q  436 aagattgtcaatgtatcataactctatt 463  Q
    |||| |||  ||||||||||||||||||    
T  50813969 aagagtgtttatgtatcataactctatt 50813996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 17983720 - 17983822
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  17983720 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 17983819  T
Q  436 aag 438  Q
    |||    
T  17983820 aag 17983822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 29589717 - 29589810
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||| |||||||||||| |||||||||| | |  |||||||||||||| || ||||| | ||| |||||| |||||||||||| || |||||||    
T  29589717 gaagagagaagagaagaagaaagagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg 29589810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 29978000 - 29977915
Alignment:
Q  344 aagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||||||||||||||||||| | || |||||||||||||| ||  | |||||||| |||||| ||||||||| || || |||||||    
T  29978000 aagagaagatgaaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattg 29977915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 459
Target Start/End: Complemental strand, 6034204 - 6034044
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | || |||||    
T  6034204 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtca 6034105  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| ||||    
T  6034104 gatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 29547936 - 29548060
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||| ||| | |  || || ||| |||| || ||||| ||||| |||||| |||||||||||| |||||||||| ||| |    
T  29547936 gaagagagaagagaagaagaaagaaaaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacct 29548035  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  29548036 aaggatgtttatgtatcataactct 29548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 41236511 - 41236347
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | ||||    
T  41236511 accctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 41236412  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| ||||| ||||||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  41236411 gtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 54473469 - 54473633
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||||||||| |  | |||| |||||||| |||  ||||| ||| | || ||||| ||||||||| |  | ||||    
T  54473469 accctttattcccatacacccttgtacactccatgtattaggaagagagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactacgt 54473568  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    || | |||||| ||||||||||||  | ||||||||||| ||||  |||| ||||||||| ||||    
T  54473569 gttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 55475314 - 55475190
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  || ||  ||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  55475314 gaagagagaagagaagaagaaagagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacct 55475215  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  55475214 aaggatgtttatgtatcataactct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 13779332 - 13779289
Alignment:
Q  83 ttccatcccactctattccattccaccactctccatcaatccaa 126  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  13779332 ttccatcccattccattccattccaccactctccatcaatccaa 13779289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 22405097 - 22405046
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  22405097 ccatcacactccattccattccatcctttttttacaaaaccaaacaatggaa 22405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 341 - 460
Target Start/End: Complemental strand, 32767076 - 32766957
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagat 440  Q
    |||| ||||||| |||||||||| | |  |||||  ||||||| || ||||| ||||| |||||| | |||||||||| || ||||||| ||| |||||     
T  32767076 gagaggagaagaagaaagagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagag 32766977  T
Q  441 tgtcaatgtatcataactct 460  Q
    |||  |||||||||||||||    
T  32766976 tgtttatgtatcataactct 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 460
Target Start/End: Original strand, 48647676 - 48647827
Alignment:
Q  309 tacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatg 408  Q
    |||||||||||||| || |||||  | |||| |||||||| ||| |||||||||| | || ||||| || |||||| |  |||||||| | |||||||||    
T  48647676 tacatctttgtacattctatgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatg 48647775  T
Q  409 tgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    ||||||| ||  | |||||||| || ||||  |||  |||| ||||||||||    
T  48647776 tgggtgttaagaggtgtattgttacctaaggatgtttatgtgtcataactct 48647827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 18769218 - 18769153
Alignment:
Q  350 agatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||||||||||| | ||||||||||||  ||||  |||||||||| |||||| |||||||||    
T  18769218 agatgaaagagaaaatgtatttgtgtggggtttacatgaccacgtgtcagatttttgtgtgggtgt 18769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 31227759 - 31227714
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaaca 63  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||    
T  31227759 ccatcacacttcattccattccattcattttttacaaaaccaaaca 31227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 31910296 - 31910192
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | || ||||| ||||||||  | || | |||||| |||||| |||||||||||| |  ||||||||||| ||||  |||| |||||||||    
T  31910296 aaagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcat 31910197  T
Q  455 aactc 459  Q
    |||||    
T  31910196 aactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 55079690 - 55079814
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtgggg-tccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcaca 434  Q
    |||| |||||||||||| |||||||||| | |  |||||||||| |||| || ||||| ||||| |||||| | ||||||||||  | ||||||| |||     
T  55079690 gaagagagaagagaagaagaaagagaaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacc 55079789  T
Q  435 taagattgtcaatgtatcataactc 459  Q
    ||||  |||  ||||||||||||||    
T  55079790 taagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4292708 - 4292759
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||| | |||||||||||||  |||||| ||||||||||||||||||    
T  4292708 ccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaa 4292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 21263651 - 21263702
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| || |||||||||   |||||||||||||||||||||||||    
T  21263651 ccatcacactccatcccattccatcccttttttacaaaaccaaacaatggaa 21263702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 432
Target Start/End: Complemental strand, 23608397 - 23608262
Alignment:
Q  297 cctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgt 396  Q
    ||||||||| | ||||||  |||||||  ||||||  | |||| |||||||| |||| ||||||||| | || |||||||| || ||| |  | ||||||    
T  23608397 cctttattcccatacatccctgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgt 23608298  T
Q  397 catatttttatgtgggtgtcaatggatgtattgtca 432  Q
    || |||||| ||||||||||||  | ||||||||||    
T  23608297 cagatttttgtgtgggtgtcaaatggtgtattgtca 23608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 4342109 - 4342147
Alignment:
Q  31 ttccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  4342109 ttccattccattacttttttacaaaaccaaacaatggaa 4342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 18769038 - 18769103
Alignment:
Q  350 agatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||||||||||| |||||||||||| |  ||||  |||| ||||| |||||| |||||||||    
T  18769038 agatgaaagagaaaatgtgtttgtgtgggatttacatgaccacatgtcagatttttgtgtgggtgt 18769103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 461
Target Start/End: Original strand, 44536723 - 44536847
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  || ||||||||| | ||  |||| ||||| |||||| ||||| |||||| || ||||||| ||| |    
T  44536723 gaagagagaagagaagaagaaagagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtcaa-gggtgtattgccacct 44536821  T
Q  436 aagattgtcaatgtatcataactcta 461  Q
    || | |||  ||||||||||||||||    
T  44536822 aaaagtgtttatgtatcataactcta 44536847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 31009170 - 31008987
Alignment:
Q  277 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 376  Q
    |||| |||| |||| || ||||||||||||| |||| |||||||||| |||||||  | |||| |||||||||||| |||| ||||| | || ||||| |    
T  31009170 ggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgcg 31009071  T
Q  377 gggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    || ||||| |  | |||||||| |||||| |||||||||  | | |||||||||||| ||||  |||  |||||||||||||||    
T  31009070 ggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactct 31008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 11617295 - 11617182
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||    |  | |||  ||| || |||||||||||||||||||||    
T  11617295 ccatcacactccattccattccattcattttttgcaaaaccaaacaatggaa-tatgg--ttttatcccactccattccattccattccaccactctcca 11617199  T
Q  118 tcaatccaaacatagcc 134  Q
    |||||||||||||||||    
T  11617198 tcaatccaaacatagcc 11617182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 459
Target Start/End: Complemental strand, 14831978 - 14831814
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||||| |||||||| |||||||  | |||| |||||||| |||  ||| ||||| | || ||||| ||| ||||| |  | ||||    
T  14831978 accctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggatccacgtgactacgt 14831879  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| ||||||||||||||||||| || ||||||| ||| ||||| |||| ||||||||| ||||    
T  14831878 gtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 35943849 - 35943992
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||| |||||||  | |||| || ||||| ||| |||||||||| | || ||||||||| ||||| || | |||||||| |||||| |||||||||    
T  35943849 ttgtacaccccatgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgt 35943948  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||  ||||||||| ||| ||||  |||| ||||||||||||||    
T  35943949 caaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 2252145 - 2252271
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  2252145 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 2252244  T
Q  436 aagattgtcaatgtatcataactctat 462  Q
    |||  |||  |||||||||||||||||    
T  2252245 aaggatgtttatgtatcataactctat 2252271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 15409546 - 15409711
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||| |||| ||  | |||| |||||||| |||  ||||||| | | || ||||| ||||||||  | || ||||    
T  15409546 accctttattcgcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcggggtccatgtggctacgt 15409645  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| |||||||||||| | |||||||||||| ||||  |||| |||||||||||||||    
T  15409646 gtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactct 15409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 16328019 - 16327922
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataag 438  Q
    |||||||||| |||||||| ||| | || ||||||| ||| |||||   ||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  16328019 gagaagagaaaatgaaagaaaaagtgtgcttgtgtgaggtgcacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaag 16327922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 282 - 459
Target Start/End: Original strand, 33825247 - 33825424
Alignment:
Q  282 atgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtc 381  Q
    |||| |||| || ||| ||||||||| |||| | || ||||| |||||||  | |||| ||||||||||||| ||||||||| | || ||||||  |||     
T  33825247 atgttacattgacaccatttattctcatacagccttctacaccccatgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtgtaaggtt 33825346  T
Q  382 cacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||||   ||||||||| ||||||||||||||||||| |  ||||||| ||| ||||| |||| ||| ||||| ||||    
T  33825347 cacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 460
Target Start/End: Original strand, 3921242 - 3921366
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||||||| |||||||||| | |  ||||| |||||||| || ||||| ||||| |||||| |||||||||||| || ||||||| ||| |    
T  3921242 gaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacct 3921341  T
Q  436 aagattgtcaatgtatcataactct 460  Q
    |||  |||  |||||||||||||||    
T  3921342 aagggtgtttatgtatcataactct 3921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 459
Target Start/End: Original strand, 33149574 - 33149738
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    |||||||||||||||||| | |||||||| |||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||| ||||| |  | ||||    
T  33149574 accctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgt 33149673  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||| |||||| |||||||||||| || ||||||  ||| ||||  |||| ||||||||| ||||    
T  33149674 gtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7506052 - 7506103
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7506052 ccatcacactctatttcattccattaattttttacaaaaccaaacaatggaa 7506103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 295 - 454
Target Start/End: Original strand, 18520820 - 18520979
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    |||||||||| || |||| | ||||||||  ||||||  | |||| |||||||| |||| ||||||||| | || ||||| ||||||||| |  | ||||    
T  18520820 accctttattttcatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgt 18520919  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| |||||||||    
T  18520920 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 4943588 - 4943475
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 117  Q
    ||||||||||| ||||||||||||   ||||||||||||||||||||||||| |||||  |    | |||  ||| |||||||||||||||||||| |||    
T  4943588 ccatcacactccattccattccatcccttttttacaaaaccaaacaatggaa-tatgg--ctccatcccactccattctattccattccaccactcacca 4943492  T
Q  118 tcaatccaaacatagcc 134  Q
     ||||||||||||||||    
T  4943491 ccaatccaaacatagcc 4943475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 461
Target Start/End: Complemental strand, 6679821 - 6679696
Alignment:
Q  336 gaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacat 435  Q
    |||| |||||||| |||  ||||||||||| |||||||| ||||||||  |  |||||||||| |||||| ||||||||||||  | ||||||| ||| |    
T  6679821 gaagagagaagaggagagaaaagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacct 6679722  T
Q  436 aagattgtcaatgtatcataactcta 461  Q
    ||   |||| ||||||||||||||||    
T  6679721 aaagatgtctatgtatcataactcta 6679696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 28177879 - 28177775
Alignment:
Q  355 aaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcat 454  Q
    ||||||||| | |||||||| ||||||||  |  |||||||||| |||||| |||||||||||| || ||||||| ||| ||||  |||| |||||||||    
T  28177879 aaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 28177780  T
Q  455 aactc 459  Q
    |||||    
T  28177779 aactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 459
Target Start/End: Complemental strand, 26720676 - 26720516
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | | |||||| |||| ||  | |||| ||||||||||||  ||||||||| | || ||||| ||| ||||  | |||||||||||    
T  26720676 tttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtca 26720577  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||| ||| ||||| || || ||||||| ||| ||||  |||| ||||||||||||||    
T  26720576 gatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 459
Target Start/End: Complemental strand, 26990425 - 26990265
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| | | |||||| |||| ||  | |||| ||||||||||||  ||||||||| | || ||||| ||| ||||  | |||||||||||    
T  26990425 tttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtca 26990326  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
     |||||| ||| ||||| || || ||||||| ||| ||||  |||| ||||||||||||||    
T  26990325 gatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 461
Target Start/End: Complemental strand, 2740438 - 2740272
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | |||||||  |||||||  | |||| |||||| | |||  ||||||||| | || ||||| ||| ||||| |  | ||||    
T  2740438 accctttattcccatacacccttgtacatcccatgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgt 2740339  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactcta 461  Q
    |||| |||||| |||||||||||| || ||||||| ||| ||||  |||| ||||||||| ||||||    
T  2740338 gtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactcta 2740272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25831392 - 25831334
Alignment:
Q  352 atgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtg 410  Q
    |||||||||||||| ||||||||||||||||||||  |||||||| | |||||| ||||    
T  25831392 atgaaagagaaaatgtgtttgtgtggggtccacatgaccacgtgttagatttttttgtg 25831334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 30084892 - 30084858
Alignment:
Q  100 ccattccaccactctccatcaatccaaacatagcc 134  Q
    |||||||||||||||||||||||||||||||||||    
T  30084892 ccattccaccactctccatcaatccaaacatagcc 30084858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 460
Target Start/End: Complemental strand, 38296320 - 38296202
Alignment:
Q  342 agaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagatt 441  Q
    ||||||| ||||||| |||||| | || |||||| || ||||| |||| |||||||  |||||| ||||||| | ||  | ||||||| ||| ||||||     
T  38296320 agaagaggagatgaatgagaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagata 38296221  T
Q  442 gtcaatgtatcataactct 460  Q
    ||| |||||||||||||||    
T  38296220 gtctatgtatcataactct 38296202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 452
Target Start/End: Complemental strand, 13811812 - 13811659
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||| | |||||| |||||||  |||||||  | |||| |||||||| |||   |||||||| | || ||||| ||||||||| |  | ||||||||    
T  13811812 tttattcccatacatccttgtacatcccatgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 13811713  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatc 452  Q
     |||||| ||||||||||||  ||||||||| ||| ||||  |||| |||||||    
T  13811712 gatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatc 13811659  T

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Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 36732878 - 36733043
Alignment:
Q  295 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgt 394  Q
    ||||||||||| | |||| | ||||||||  ||||||  | |||| |||||||| |||  ||||||||| | || ||||| ||||||||| |  | | ||    
T  36732878 accctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactatgt 36732977  T
Q  395 gtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||| |||||| |||||||||||| || |||||||  || ||||  |||| ||||||||| |||||    
T  36732978 gtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactct 36733043  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 459
Target Start/End: Complemental strand, 35785342 - 35785199
Alignment:
Q  316 ttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgt 415  Q
    |||||||| |||||||  | |||| |||||||  |||  ||||||||| | || ||||| ||| ||||| || | |||||||| |||||| |||||||||    
T  35785342 ttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgt 35785243  T
Q  416 caatggatgtattgtcacataagattgtcaatgtatcataactc 459  Q
    |||  | ||||||| ||| ||||  |||| ||||||||| ||||    
T  35785242 caaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 9603973 - 9603812
Alignment:
Q  299 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtca 398  Q
    ||||||||| |||| |||||||||  ||| |||  | |||| |||||||  | |||||||||||| | || |||| ||||||||| ||  ||| ||||||    
T  9603973 tttattctcatacacctttgtacatcccaagcactaagaagagagaagacgaaatgaaagagaaagtgtgattgtatggggtccatatgaccatgtgtca 9603874  T
Q  399 tatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
     |||||| ||| ||||| ||||  |||||| |||| ||||  |||  ||||||||| |||||    
T  9603873 gatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactct 9603812  T

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Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 41483544 - 41483507
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    |||||||||||||||  |||||||||||||||||||||    
T  41483544 attccattccaccacattccatcaatccaaacatagcc 41483507  T

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Target: scaffold0039 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 56977 - 56928
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatgg 67  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  56977 ccatcacactctattccattccattcattttttacataaccaaacaatgg 56928  T

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Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 56901 - 56864
Alignment:
Q  97 attccattccaccactctccatcaatccaaacatagcc 134  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  56901 attcccttccatcactctccatcaatccaaacatagcc 56864  T

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Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 38650 - 38739
Alignment:
Q  32 tccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 131  Q
    |||||||||||  |||||||||||||||||||||||        ||||||||||||||||||     ||||||||| ||||||||||||||| |||||||    
T  38650 tccattccattccttttttacaaaaccaaacaatgg--------aacatggttccatcccac-----tccattccatcactctccatcaatcaaaacata 38736  T

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Target: scaffold0127 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 30206 - 30287
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 107  Q
    |||||||| || |||||||||||||  |||||||||||||||||||        ||||||||||| |||||||||||| |||||||||||    
T  30206 ccatcacattccattccattccattatttttttacaaaaccaaaca--------atggaacatggctccatcccactccattccattcca 30287  T

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Target: scaffold0321 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 10141 - 10210
Alignment:
Q  391 acgtgtcatatttttatgtgggtgtcaatggatgtattgtcacataagattgtcaatgtatcataactct 460  Q
    |||||||| |||||||||||| |||||| |||||||||| ||| |||   |||| |||||||||||||||    
T  10141 acgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactct 10210  T

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Target: scaffold0224 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 12491 - 12545
Alignment:
Q  18 ccatcacactctattccattccatt---tattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| |||||||||||||   | |||||||||||||||||||||||||    
T  12491 ccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 12545  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 152616 - 152528
Alignment:
Q  341 gagaagagaagatgaaagagaaaatatgtttgtgtggggtccacatagccacgtgtcatatttttatgtgggtgtcaatggatgtattg 429  Q
    |||||||||||| |||||||||| | | |||||| ||| |||| ||  |||| ||||| |||||| |||||||||||| || |||||||    
T  152616 gagaagagaagaagaaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattg 152528  T

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Target: scaffold0227 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 259 - 310
Alignment:
Q  18 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 69  Q
    ||||||||||| ||||||||||||    ||||||||||||||||||||||||    
T  259 ccatcacactccattccattccatcccatttttacaaaaccaaacaatggaa 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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