View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18367_low_6 (Length: 398)
Name: NF18367_low_6
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 9071422 - 9071217
Alignment:
| Q |
16 |
aactcagatgaatgataaagatgctgatatttgtcctattgagaataaaggaaaggaaaatggtccttgattgaggaccataaatcttgtatcagttaaa |
115 |
Q |
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| T |
9071422 |
aactcagatgaatgataaagatgctgatatttgtccttttgagaataaaggaaaggaaaatggtccttgattgaggaccataaatcttgtatcagttaaa |
9071323 |
T |
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| Q |
116 |
caataacattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatcatcatatccatt |
215 |
Q |
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| T |
9071322 |
caataccattatgaatttctcttaaattttatagttatcttacccgaatgaattttcttgtcactgttactggtttaggctatttatcatcatatccatt |
9071223 |
T |
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| Q |
216 |
ggtttt |
221 |
Q |
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|||||| |
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| T |
9071222 |
ggtttt |
9071217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 224 - 389
Target Start/End: Complemental strand, 9071189 - 9071024
Alignment:
| Q |
224 |
ctaagtttaatgaatagccatggactctagggccgacccggtgctcctaagtttatttttcgttggcatcaaaaaatatttcgctagcaacagctacgtg |
323 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9071189 |
ctaagtttaatgaataaccgtggactctagggccgacccggtgctcctaagtttatttttcgttggcataaaaaaatatttcgctagcaacagctacgtg |
9071090 |
T |
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| Q |
324 |
ccgcgacaatgattagtccgtaactgattttggccgtagccctcgattgagtgttgtctttgatga |
389 |
Q |
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| T |
9071089 |
ccgcgacaatgattagtccgtaactgattttggcggtagccctcgattgagtgttgtctttaatga |
9071024 |
T |
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