View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_high_12 (Length: 254)
Name: NF18368_high_12
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 29464123 - 29464352
Alignment:
| Q |
15 |
atcaaactagattaagtcaaagataaatcaaactagataaaataaactcgcacattttggccataatctttataaatacacttgcaagcacttttagacg |
114 |
Q |
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| T |
29464123 |
atcaaactagattaagtcaaagataaatcaaactagataaaataaactctcacattttggccataatctttataaatacacttgcaagcacttttagacg |
29464222 |
T |
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| Q |
115 |
atcttttagaagatagattagatcattggaataacttcaagcaac------aagtcatctcagagtacccattatatctgtacattttgcgacacaagat |
208 |
Q |
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| T |
29464223 |
atcttttagaagatagattagatcattggaataacttcaagcaacaagtataagtcatctcaaagtacccattatatctgtacattttgcgacacaagat |
29464322 |
T |
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| Q |
209 |
tcaaagaaaaactcaaataaaccaaaatac |
238 |
Q |
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| T |
29464323 |
tcaaagaaaaactcaaataaaccaaaatac |
29464352 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 8674819 - 8674747
Alignment:
| Q |
53 |
aaaataaactcgcacattttggccataatctttataaatacacttgcaagcacttttagacgatcttttagaa |
125 |
Q |
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| T |
8674819 |
aaaataaactagcacattttggctataatgtttataaataaatttgcaagctttttttgatgatctttcagaa |
8674747 |
T |
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