View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_high_2 (Length: 514)
Name: NF18368_high_2
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 152 - 417
Target Start/End: Complemental strand, 28309548 - 28309297
Alignment:
| Q |
152 |
ttcttaaaagaattacc-tatcattcaaaattgtactttacaaaattatcattcaaaattaaaagaatttataaacaaatagtttaataagtagtaaata |
250 |
Q |
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| T |
28309548 |
ttcttaaaagaattaccgtatcatttaaaattatactttacaaaattatcattcaaaattaaaa----------acaaatagttttataa-------ata |
28309466 |
T |
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| Q |
251 |
gtatgattaaaaatattaatgttttgttgaaactgaaatataatttataatctgtgacaannnnnnn--aaagtgacttatatattagaatgaatggagt |
348 |
Q |
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| T |
28309465 |
gtatgattaaaaatattaatgttttgttgaaactgatatataatttataatctgtgacaatttttttttaaagtgacttatatattagaatgaatggagt |
28309366 |
T |
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| Q |
349 |
agaataatattcaaattattcaccataacctcactttacaatgaataatggtgtacaaatcacattttt |
417 |
Q |
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| T |
28309365 |
agaataatattcaaattcttcaccataacctcactttacaatgaataatggtgtacaaatcacattttt |
28309297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 28309206 - 28309112
Alignment:
| Q |
412 |
atttttcaagtacgaatatgaaaattccccttaataaaaat---gtactattaatagcattcctaggtatgaacaatacaacccttcttctgatg |
503 |
Q |
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| T |
28309206 |
atttttcaagtacgaatatgaaaattccccttaattgtagttttgtgctattaatagcattcctaggtatgaacagtacaacccttcttctgatg |
28309112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 28309697 - 28309655
Alignment:
| Q |
16 |
acaactacattatttattgaatacctattatcaactacgtaca |
58 |
Q |
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| T |
28309697 |
acaactacattatttattgaatacctattatcaactacgtaca |
28309655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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