View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_high_3 (Length: 451)
Name: NF18368_high_3
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 220 - 450
Target Start/End: Complemental strand, 11041455 - 11041223
Alignment:
| Q |
220 |
tataagagtggtttgagatcttaccaaaagaaccactttcataannnnnnn-gtattattcctcatttgctaaacattcaccgtcttatcaaaaaagttg |
318 |
Q |
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| T |
11041455 |
tataagagtggtttaagatcttacgaaaagaaccattttcataattttttttgtattataccacatttgctcaacatcgaccgtcttatcaaaaaaattg |
11041356 |
T |
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| Q |
319 |
aaatcatcc-ggaacttttcaaatctttttccttgannnnnnnaaggaatccatttccttgattaaatttcctagaagttaagaatctcacacttgaaca |
417 |
Q |
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| T |
11041355 |
aaatcatcccggaacttttcaaatctttttccttgatttttttaaggaatccttttccttgattaaatttcctagaagttaagaatctcacacttgaaca |
11041256 |
T |
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| Q |
418 |
aactaggtagaacacaatgtaccttgttggtct |
450 |
Q |
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| T |
11041255 |
aactaggtagaacacaatgtacctcgttggtct |
11041223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 11042251 - 11042116
Alignment:
| Q |
82 |
ctgagagtctgatattttattgtttaatcatcttaaatttacttcattattatactaggcatgtttataacataagcataaacaagtgatcaattttaaa |
181 |
Q |
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| T |
11042251 |
ctgagagtctgatattttattgtttaatcatcttaaatttacttcattattatattaggcatgtttataacataag------caagtgatcaattttaaa |
11042158 |
T |
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| Q |
182 |
cggtatttattcttttgaaaataaatacaatccatacttataag |
225 |
Q |
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| T |
11042157 |
cggtatttattcttttg--aataaatacaatccatacttataag |
11042116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 11540381 - 11540338
Alignment:
| Q |
86 |
gagtctgatattttattgtttaatcatcttaaatttacttcatt |
129 |
Q |
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| T |
11540381 |
gagtctgatattttattgtttaatcattttaacttcacttcatt |
11540338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 11539941 - 11539909
Alignment:
| Q |
153 |
ataagcataaacaagtgatcaattttaaacggt |
185 |
Q |
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| T |
11539941 |
ataagcatacacaagtgatcaattttaaacggt |
11539909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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