View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18368_high_5 (Length: 407)

Name: NF18368_high_5
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18368_high_5
NF18368_high_5
[»] chr8 (27 HSPs)
chr8 (10-272)||(38296424-38296687)
chr8 (271-407)||(7147054-7147190)
chr8 (271-407)||(37345712-37345848)
chr8 (271-407)||(40058303-40058439)
chr8 (271-407)||(40918731-40918867)
chr8 (271-407)||(30999524-30999660)
chr8 (271-407)||(43275399-43275535)
chr8 (271-407)||(2539930-2540066)
chr8 (271-407)||(11174223-11174359)
chr8 (271-407)||(11646325-11646461)
chr8 (271-407)||(36068221-36068357)
chr8 (271-405)||(3585594-3585728)
chr8 (271-407)||(27035136-27035272)
chr8 (286-399)||(20546308-20546421)
chr8 (271-407)||(35866754-35866890)
chr8 (289-404)||(27563885-27564000)
chr8 (268-407)||(28568059-28568198)
chr8 (268-407)||(28575652-28575791)
chr8 (277-407)||(26628822-26628952)
chr8 (271-395)||(28562574-28562698)
chr8 (271-399)||(45400770-45400898)
chr8 (300-384)||(10180897-10180981)
chr8 (307-407)||(13880991-13881091)
chr8 (288-399)||(30906706-30906817)
chr8 (271-333)||(41305762-41305824)
chr8 (332-381)||(33751241-33751290)
chr8 (347-407)||(28326734-28326794)
[»] scaffold0368 (1 HSPs)
scaffold0368 (10-271)||(1787-2049)
[»] chr5 (25 HSPs)
chr5 (271-407)||(40886610-40886746)
chr5 (268-407)||(36561096-36561235)
chr5 (271-407)||(30720492-30720628)
chr5 (271-405)||(12806853-12806987)
chr5 (271-407)||(10285058-10285193)
chr5 (271-399)||(25773798-25773926)
chr5 (271-407)||(25683229-25683365)
chr5 (271-404)||(23097724-23097857)
chr5 (271-396)||(37900623-37900748)
chr5 (273-396)||(16983409-16983532)
chr5 (271-380)||(734339-734448)
chr5 (277-407)||(39071023-39071153)
chr5 (278-404)||(11319700-11319826)
chr5 (271-404)||(1056625-1056756)
chr5 (282-407)||(16054252-16054377)
chr5 (269-381)||(26168075-26168187)
chr5 (290-384)||(30402981-30403075)
chr5 (326-399)||(11797695-11797768)
chr5 (302-380)||(11795314-11795392)
chr5 (51-187)||(24018795-24018932)
chr5 (343-399)||(7277495-7277551)
chr5 (332-385)||(12305687-12305740)
chr5 (308-364)||(15629320-15629376)
chr5 (271-333)||(15304822-15304884)
chr5 (268-309)||(15305227-15305268)
[»] chr3 (35 HSPs)
chr3 (271-407)||(46694110-46694246)
chr3 (269-407)||(13364984-13365122)
chr3 (271-407)||(36881421-36881557)
chr3 (271-399)||(29375281-29375409)
chr3 (271-407)||(23087931-23088067)
chr3 (269-407)||(198996-199134)
chr3 (271-407)||(3383217-3383353)
chr3 (271-407)||(19241668-19241804)
chr3 (271-407)||(32834989-32835125)
chr3 (271-396)||(13703364-13703489)
chr3 (286-407)||(43750277-43750398)
chr3 (271-380)||(48820508-48820617)
chr3 (271-407)||(18355868-18356004)
chr3 (294-405)||(31873886-31873996)
chr3 (277-398)||(48963269-48963390)
chr3 (282-404)||(48436368-48436490)
chr3 (277-384)||(6901725-6901831)
chr3 (282-384)||(54086716-54086818)
chr3 (271-356)||(26783661-26783746)
chr3 (281-399)||(27706999-27707116)
chr3 (326-404)||(52009105-52009183)
chr3 (280-407)||(24064364-24064488)
chr3 (306-377)||(1455186-1455257)
chr3 (308-399)||(53559648-53559739)
chr3 (271-333)||(19912153-19912215)
chr3 (271-333)||(38806320-38806382)
chr3 (326-400)||(52805082-52805156)
chr3 (312-407)||(37293552-37293644)
chr3 (347-407)||(46188907-46188967)
chr3 (328-376)||(51584442-51584490)
chr3 (336-399)||(37781085-37781148)
chr3 (271-333)||(12095402-12095464)
chr3 (271-333)||(44276775-44276837)
chr3 (347-404)||(40228280-40228337)
chr3 (271-303)||(37293437-37293469)
[»] chr1 (33 HSPs)
chr1 (271-407)||(40783657-40783793)
chr1 (271-407)||(23045279-23045415)
chr1 (271-404)||(321770-321903)
chr1 (271-407)||(47037852-47037988)
chr1 (271-406)||(284475-284610)
chr1 (271-399)||(23526388-23526516)
chr1 (277-406)||(27210961-27211090)
chr1 (266-399)||(24771901-24772034)
chr1 (271-399)||(33082893-33083021)
chr1 (276-407)||(46771779-46771910)
chr1 (278-396)||(40562293-40562410)
chr1 (306-407)||(40261320-40261421)
chr1 (271-407)||(51064754-51064890)
chr1 (271-407)||(31003787-31003923)
chr1 (269-407)||(18396835-18396973)
chr1 (268-407)||(27143011-27143148)
chr1 (276-399)||(14925613-14925734)
chr1 (308-404)||(40052501-40052597)
chr1 (270-407)||(34458723-34458860)
chr1 (278-380)||(23166858-23166960)
chr1 (278-395)||(24876714-24876831)
chr1 (278-399)||(31061463-31061587)
chr1 (278-398)||(25929248-25929368)
chr1 (307-365)||(1749457-1749515)
chr1 (271-383)||(1837827-1837940)
chr1 (340-405)||(3657217-3657282)
chr1 (268-333)||(3943742-3943807)
chr1 (307-362)||(14350510-14350565)
chr1 (271-333)||(41959788-41959850)
chr1 (271-338)||(44227848-44227915)
chr1 (271-309)||(51064995-51065033)
chr1 (271-328)||(9589615-9589672)
chr1 (344-384)||(49756684-49756724)
[»] chr4 (28 HSPs)
chr4 (271-404)||(21310565-21310698)
chr4 (271-407)||(12071701-12071837)
chr4 (271-407)||(14261185-14261321)
chr4 (271-407)||(22321268-22321404)
chr4 (271-407)||(24706247-24706383)
chr4 (269-404)||(40122485-40122620)
chr4 (271-404)||(25704795-25704928)
chr4 (271-407)||(44568978-44569114)
chr4 (273-407)||(21661537-21661671)
chr4 (273-407)||(21670301-21670435)
chr4 (281-404)||(50768006-50768129)
chr4 (271-407)||(20249014-20249150)
chr4 (272-404)||(21064905-21065037)
chr4 (268-407)||(19692863-19693002)
chr4 (268-407)||(19703448-19703587)
chr4 (287-396)||(31892384-31892493)
chr4 (281-407)||(18507276-18507402)
chr4 (271-365)||(50839031-50839125)
chr4 (278-407)||(6128956-6129085)
chr4 (316-407)||(34324627-34324719)
chr4 (271-399)||(32543628-32543756)
chr4 (300-393)||(48652379-48652472)
chr4 (273-364)||(20714322-20714413)
chr4 (326-381)||(17038355-17038410)
chr4 (271-306)||(39295418-39295453)
chr4 (348-384)||(20714426-20714462)
chr4 (335-407)||(26676644-26676716)
chr4 (271-307)||(34324618-34324654)
[»] chr2 (22 HSPs)
chr2 (271-404)||(22388138-22388271)
chr2 (271-407)||(23366930-23367066)
chr2 (271-407)||(3519048-3519184)
chr2 (261-404)||(1102645-1102788)
chr2 (271-407)||(39938311-39938447)
chr2 (271-407)||(1646428-1646564)
chr2 (271-404)||(37673743-37673876)
chr2 (271-407)||(12969740-12969876)
chr2 (271-384)||(40756911-40757024)
chr2 (271-396)||(28110095-28110220)
chr2 (270-404)||(39561894-39562023)
chr2 (277-404)||(37284525-37284650)
chr2 (274-380)||(36447426-36447532)
chr2 (308-406)||(19976470-19976568)
chr2 (301-407)||(34242115-34242221)
chr2 (336-398)||(28401400-28401462)
chr2 (306-364)||(32838964-32839022)
chr2 (278-399)||(4917910-4918031)
chr2 (300-359)||(14779964-14780023)
chr2 (326-407)||(1002786-1002867)
chr2 (329-384)||(32323691-32323746)
chr2 (269-309)||(1102501-1102541)
[»] chr7 (17 HSPs)
chr7 (271-407)||(27813952-27814088)
chr7 (271-407)||(36453124-36453260)
chr7 (267-406)||(10981650-10981789)
chr7 (271-407)||(25614353-25614489)
chr7 (271-407)||(47110591-47110727)
chr7 (271-406)||(40349104-40349238)
chr7 (271-399)||(16662242-16662370)
chr7 (271-399)||(17636602-17636730)
chr7 (300-399)||(27941013-27941112)
chr7 (306-404)||(3091657-3091755)
chr7 (306-404)||(24456800-24456898)
chr7 (271-407)||(16360521-16360653)
chr7 (332-386)||(6737252-6737306)
chr7 (306-365)||(7743433-7743492)
chr7 (329-404)||(8380082-8380157)
chr7 (329-384)||(41480639-41480694)
chr7 (277-333)||(25059456-25059512)
[»] chr6 (19 HSPs)
chr6 (271-407)||(8626623-8626759)
chr6 (271-407)||(13757348-13757484)
chr6 (271-407)||(1605719-1605855)
chr6 (271-407)||(29260333-29260469)
chr6 (271-407)||(4129568-4129703)
chr6 (271-407)||(15064695-15064831)
chr6 (267-405)||(7761443-7761581)
chr6 (270-407)||(31559737-31559874)
chr6 (271-404)||(17942587-17942720)
chr6 (278-404)||(8235769-8235895)
chr6 (271-407)||(30734483-30734619)
chr6 (271-395)||(20398238-20398362)
chr6 (281-395)||(26860917-26861031)
chr6 (271-395)||(3798252-3798376)
chr6 (326-395)||(847831-847900)
chr6 (271-379)||(1814762-1814870)
chr6 (271-333)||(19996322-19996384)
chr6 (326-377)||(879299-879350)
chr6 (271-309)||(15064933-15064971)
[»] scaffold1770 (1 HSPs)
scaffold1770 (271-407)||(303-438)
[»] scaffold0054 (1 HSPs)
scaffold0054 (271-399)||(45602-45730)
[»] scaffold0062 (1 HSPs)
scaffold0062 (291-407)||(287-403)
[»] scaffold0168 (1 HSPs)
scaffold0168 (271-407)||(7809-7945)
[»] scaffold0343 (1 HSPs)
scaffold0343 (281-404)||(6911-7033)
[»] scaffold0056 (1 HSPs)
scaffold0056 (281-399)||(71232-71350)
[»] scaffold0025 (1 HSPs)
scaffold0025 (305-384)||(65199-65278)
[»] scaffold0939 (1 HSPs)
scaffold0939 (305-379)||(1110-1184)
[»] scaffold0076 (1 HSPs)
scaffold0076 (299-404)||(15351-15456)
[»] scaffold1431 (1 HSPs)
scaffold1431 (373-407)||(1-35)
[»] scaffold0257 (1 HSPs)
scaffold0257 (271-333)||(23851-23913)
[»] scaffold0004 (1 HSPs)
scaffold0004 (326-395)||(234332-234399)
[»] scaffold0003 (1 HSPs)
scaffold0003 (330-407)||(252633-252710)
[»] scaffold0236 (1 HSPs)
scaffold0236 (331-407)||(14375-14451)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 38296424 - 38296687
Alignment:
Q  10 attattctcgtcaaataaatgcaaaacgcataaatactcacgaaaa-aacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38296424 attattctcatcaaataaatgcaaaacgcataaatactcacgaaaaaaacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca 38296523  T
Q  109 aagttcaaaactacccaaaacaatgaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38296524 aagttcaaaactacccaaaacaataaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg 38296623  T
Q  209 aagccaaaaacccagcacaaaaccaactgccaagccaacctccagattccctcctaacatagta 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38296624 aagccaaaaacccagcacaaaaccaactgccaagccaacctccaggttccctcctaacatagta 38296687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 7147190 - 7147054
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 7147091  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7147090 tcaataatacccttgcatatttattgtagagagagaa 7147054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 37345848 - 37345712
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37345848 tactccttccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 37345749  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37345748 tcaataatacccttgcatatttattgtagagagagaa 37345712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 40058303 - 40058439
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40058402  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40058403 tcaataatacccttgcatatttattgtagagagagaa 40058439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 40918731 - 40918867
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40918830  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40918831 tcaataatacccttgcatatttattgtagagagagaa 40918867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 30999524 - 30999660
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  30999524 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgttactttcaagtttcaatgcaacattaattattgtcttg 30999623  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30999624 tcaataatacccttgcatatttattgtagagagagaa 30999660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 43275399 - 43275535
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  43275399 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattatcttg 43275498  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  43275499 tcaataatacccttgcatatttattgtagagagagaa 43275535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 2539930 - 2540066
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2539930 tactccttccgtttcataatacttgtccattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 2540029  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2540030 tcaataatacccttgcatatttattgtagagagagaa 2540066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 11174223 - 11174359
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11174223 tactccctccgtttcataatacttgttcattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 11174322  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11174323 tcaataatacccttgcatatttattgtagagagagaa 11174359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 11646325 - 11646461
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  11646325 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttg 11646424  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11646425 tcaataatacccttgcatatttattgtagagagagaa 11646461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 36068357 - 36068221
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  36068357 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttg 36068258  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36068257 tcaataatacccttgcatatttattgtagagagagaa 36068221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 271 - 405
Target Start/End: Complemental strand, 3585728 - 3585594
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  3585728 tactccatccgtttcataatacttgtctattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttg 3585629  T
Q  371 tcaataatacccttgcatatttattgtagggagag 405  Q
    ||||||||||||||||||||||||||||| |||||    
T  3585628 tcaataatacccttgcatatttattgtagagagag 3585594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 27035272 - 27035136
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27035272 tactgcctccgtttcataatacttgttcattttggagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 27035173  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| |||||||| ||||| |||||||    
T  27035172 tcaataatacccttacatatttactgtagagagagaa 27035136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 286 - 399
Target Start/End: Original strand, 20546308 - 20546421
Alignment:
Q  286 ataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttg 385  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||     
T  20546308 ataatacttgtccattttgaagaataattttgtttcacaatacttgtcactttcaggtttcaatgcaacattaattattgtcttgtcaataataccctta 20546407  T
Q  386 catatttattgtag 399  Q
    ||||||||||||||    
T  20546408 catatttattgtag 20546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 35866890 - 35866754
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||   ||||||||| |||||||||||||| |||||||||||||||  ||     
T  35866890 tactccatccgtttcacaatacttgtctattttggagaataattttgtttcattttacttgtcactttcaagtttcaattcaacattaattattggttta 35866791  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||| ||| ||||| |||||||| |||||||    
T  35866790 tcaataatactcttacatatctattgtagagagagaa 35866754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 27563885 - 27564000
Alignment:
Q  289 atacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcat 388  Q
    |||||||||  |||| ||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | |    
T  27563885 atacttgtcgcttttggagaacaattttgtttcatattacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatacccttacct 27563984  T
Q  389 atttattgtagggaga 404  Q
    ||||||||||| ||||    
T  27563985 atttattgtagagaga 27564000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 28568198 - 28568059
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||   ||||||||| ||| ||||||||||||||||||||||||||      
T  28568198 tagtactccctccatttcacaatacttgtccattttggagaattattttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggt 28568099  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    || |||||| ||||||| | |||||||||| | |||||||    
T  28568098 ttatcaatattacccttacctatttattgttgagagagaa 28568059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 28575791 - 28575652
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||   ||||||||| ||| ||||||||||||||||||||||||||      
T  28575791 tagtactccctccatttcacaatacttgtccattttggagaattattttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggt 28575692  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    || |||||| ||||||| | |||||||||| | |||||||    
T  28575691 ttatcaatattacccttacctatttattgttgagagagaa 28575652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 277 - 407
Target Start/End: Original strand, 26628822 - 26628952
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    |||||||||| ||||| |||   |||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||  || ||||||    
T  26628822 ctccgtttcacaatacatgttgcttttggagaataattttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaata 26628921  T
Q  377 atacccttgcatatttattgtagggagagaa 407  Q
    |||||||| | |||||||||||| |||||||    
T  26628922 atacccttacctatttattgtagagagagaa 26628952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 395
Target Start/End: Complemental strand, 28562698 - 28562574
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||| ||| ||||||| ||||||||  ||||| |||||||||||   ||||||||| ||||||||||||||||||||||||||||||  ||     
T  28562698 tactccctccgtctcacaatacttatccattttgaagaattattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggttta 28562599  T
Q  371 tcaataatacccttgcatatttatt 395  Q
    |||||| ||| ||| | ||||||||    
T  28562598 tcaatattactcttacctatttatt 28562574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 45400770 - 45400898
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||  |||  |||| |||||||||||||||||||  || |||||| ||| || ||||||||||||||||||||||   ||     
T  45400770 tactccctccgtttcataatacaagtcgtttttggagaataattttgtttcactttatttgtcacttttaaatttcaatgcaacattaattattaattta 45400869  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    |||||||||  ||| | ||||||||||||    
T  45400870 tcaataatattcttacttatttattgtag 45400898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 10180897 - 10180981
Alignment:
Q  300 ttttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||    |||||||||||||||||    
T  10180897 ttttggagaacaattttgtttcacattacttgtcactttcaagtttcaatgcaacattagttatgaatttgtcaataataccctt 10180981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 13880991 - 13881091
Alignment:
Q  307 gaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagaga 406  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||||  |||| |||||||  ||| |  ||||||||||| ||||||    
T  13880991 gaataattttgtttcaaattacttgtcactttcaagtttcaatgcaatattaattattgatttgttaataataatcttactaatttattgtagagagaga 13881090  T
Q  407 a 407  Q
    |    
T  13881091 a 13881091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 30906706 - 30906817
Alignment:
Q  288 aatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgca 387  Q
    ||||||||||  ||||  ||||||||||| ||| ||| ||||||| | ||| || ||| ||||||| |||||||||||  |||| ||||||| |||| |     
T  30906706 aatacttgtcgtttttgaagaataattttattttacattacttgttacttttaaattttaatgcaatattaattattgaattgttaataatatccttact 30906805  T
Q  388 tatttattgtag 399  Q
    ||||| ||||||    
T  30906806 tatttgttgtag 30906817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 41305762 - 41305824
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    ||||| |||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  41305762 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 41305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 33751241 - 33751290
Alignment:
Q  332 tcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacc 381  Q
    ||||||||||  |||||||||| |||||||||||| || |||||||||||    
T  33751241 tcattttcaaagttcaatgcaatattaattattgttttatcaataatacc 33751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 28326734 - 28326794
Alignment:
Q  347 aatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||| |||||||||  ||||||||||||  ||||||| |||||||| | |||||||    
T  28326734 aatgcaacactaattattggtttgtcaataataatcttgcatgtttattgtggagagagaa 28326794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1787 - 2049
Alignment:
Q  10 attattctcgtcaaataaatgcaaaacgcataaatactcacgaaaa-aacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787 attattctcatcaaataaatgcaaaacgcataaatactcacgaaaaaaacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca 1886  T
Q  109 aagttcaaaactacccaaaacaatgaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1887 aagttcaaaactacccaaaacaataaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg 1986  T
Q  209 aagccaaaaacccagcacaaaaccaactgccaagccaacctccagattccctcctaacatagt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1987 aagccaaaaacccagcacaaaaccaactgccaagccaacctccaggttccctcctaacatagt 2049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 40886610 - 40886746
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40886709  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40886710 tcaataatacccttgcatatttattgtagagagagaa 40886746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 268 - 407
Target Start/End: Original strand, 36561096 - 36561235
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  36561096 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaagtattgtc 36561195  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  36561196 ttgtcaataatacccttgcatatttattgtagagagagaa 36561235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 30720492 - 30720628
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30720492 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattagttattgtcttg 30720591  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30720592 tcaataatacccttgcatatttattgtagagagagaa 30720628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 271 - 405
Target Start/End: Original strand, 12806853 - 12806987
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12806853 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtctctttcaagtttcaatgcaacattaattattgtcttg 12806952  T
Q  371 tcaataatacccttgcatatttattgtagggagag 405  Q
    ||||||||||||||||||||||||||||| |||||    
T  12806953 tcaataatacccttgcatatttattgtagagagag 12806987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 10285058 - 10285193
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10285058 tactccctccgtttcataatacttgtctattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 10285157  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  10285158 tcaataata-ccttgcatatttattgtagagagagaa 10285193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 25773926 - 25773798
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  25773926 tactctctccgtttcataatacttgtccattttagagaataagtttgtttcacaatacttatcactttcaagtttcaatgcaacattaattattgtcttg 25773827  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    |||||||||||||||||||||||||||||    
T  25773826 tcaataatacccttgcatatttattgtag 25773798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 25683229 - 25683365
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataattttgtttcataaaacttgtcactttcaagtttcaatgcaacattaattattgttttg 25683328  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| |||||||||||||| |||||||    
T  25683329 tcaataatacccttacatatttattgtagagagagaa 25683365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 23097724 - 23097857
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||    
T  23097724 tactccttccgtttcataatacttgtccattttggagaataattttgtttcacaatacttgttactttcatgtttcaatgcaatattaattattgtcttg 23097823  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    |||||||||||||| |||||||||||||| ||||    
T  23097824 tcaataatacccttacatatttattgtagagaga 23097857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 396
Target Start/End: Original strand, 37900623 - 37900748
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| |||||||||||||||||||| |||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  37900623 tactccttccgtttcataatacttgtctattttgaagaataattttgtttcacgatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 37900722  T
Q  371 tcaataatacccttgcatatttattg 396  Q
    ||||||||||||||||||||||||||    
T  37900723 tcaataatacccttgcatatttattg 37900748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 273 - 396
Target Start/End: Complemental strand, 16983532 - 16983409
Alignment:
Q  273 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtc 372  Q
    ||||||| |||| |||||||||||| |||||  ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||    
T  16983532 ctccctctgttttataatacttgtctattttgaagaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtcttttc 16983433  T
Q  373 aataatacccttgcatatttattg 396  Q
    |||||||||||||||||| |||||    
T  16983432 aataatacccttgcatatctattg 16983409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 734339 - 734448
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||  ||     
T  734339 tactcccaccgtttcacaatacttgtccattttggagaataattttgtttcactttacttgtcactttcaagtttcaatacaacattaattattggttta 734438  T
Q  371 tcaataatac 380  Q
    ||||||||||    
T  734439 tcaataatac 734448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 277 - 407
Target Start/End: Complemental strand, 39071153 - 39071023
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    ||||| |||| |||||||||| ||||| |||||||||||||||||||  ||||||||| ||| |||| |||||||||||||||||||||  || ||||||    
T  39071153 ctccgattcacaatacttgtctatttttgagaataattttgtttcactttacttgtcacttttaagtatcaatgcaacattaattattggtttatcaata 39071054  T
Q  377 atacccttgcatatttattgtagggagagaa 407  Q
    || | ||| | |||||||||||| |||||||    
T  39071053 atccacttacctatttattgtagagagagaa 39071023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 11319826 - 11319700
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  || || ||| ||||| |||| ||||||| |||||||||||  || | |||||    
T  11319826 tccgtttcataatacttgtctattttagagaataattttgtttcactttatttatcactttcaggttttaatgcaatattaattattggtttattaataa 11319727  T
Q  378 tacccttgcatatttattgtagggaga 404  Q
    ||| ||| | |||||||||||| ||||    
T  11319726 tactcttacctatttattgtagagaga 11319700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 1056625 - 1056756
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||| ||||||||||  |||| |||||||||||| ||||| | ||||  ||| |||||||||||||||||||||||||||||   |||    
T  1056625 tactccctccgtttcacaatacttgtcacttttggagaataattttatttca-attacta-tcactttcaagtttcaatgcaacattaattattagtttg 1056722  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    |||||||||| |||   |||||||||||| ||||    
T  1056723 tcaataatactcttatttatttattgtagagaga 1056756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 16054377 - 16054252
Alignment:
Q  282 tttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacc 381  Q
    ||||| ||||| ||||  |||| ||||||||||||| |||||  |  |||||| |||||||||||||||||||||||||||||   ||||||||||||||    
T  16054377 tttcaaaatacatgtcgcttttggagaataattttggttcactttggttgtcactttcaagtttcaatgcaacattaattattagtttgtcaataatacc 16054278  T
Q  382 cttgcatatttattgtagggagagaa 407  Q
    |||   |||||||||||| |||||||    
T  16054277 cttatctatttattgtagagagagaa 16054252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 381
Target Start/End: Complemental strand, 26168187 - 26168075
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtct 368  Q
    |||||||| |||||||||  |||| ||||  ||||||||||||||||||||||||  || |||||| |||||||||||||||||| |||||| |||   |    
T  26168187 agtactccttccgtttcacgatacatgtcgtttttagagaataattttgtttcactttaattgtcactttcaagtttcaatgcaagattaatgatttgtt 26168088  T
Q  369 tgtcaataatacc 381  Q
    ||| |||||||||    
T  26168087 tgttaataatacc 26168075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 30402981 - 30403075
Alignment:
Q  290 tacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    ||||||||  ||||||||||||||||| |||||   ||||||||| ||| |||||||||| ||| |||||||||||  |||||||||||||||||    
T  30402981 tacttgtcgcttttagagaataattttatttcattttacttgtcacttttaagtttcaatacaaaattaattattggtttgtcaataataccctt 30403075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 11797768 - 11797695
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtag 399  Q
    |||||||||||||||| ||||||| ||||||||||||||   |||||||| |||||||||| ||||||||||||    
T  11797768 tacttgtcattttcaaatttcaatacaacattaattattagtttgtcaatgatacccttgcttatttattgtag 11797695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 11795314 - 11795392
Alignment:
Q  302 ttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    ||||||||||||||||||||||  || || ||| |||||||||||||||||||||||||||| |  || ||||||||||    
T  11795314 ttagagaataattttgtttcactttatttatcactttcaagtttcaatgcaacattaattataggtttatcaataatac 11795392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 24018932 - 24018795
Alignment:
Q  51 gaaaaaacaaaagaatacaatccggtg-cgcaaatatacggaacacctctcaaaagccaaag-ttcaaaactacccaaaacaatgaggccggagtatacg 148  Q
    |||||||||| ||||||||| | |||| | || |||||||||||||| ||||||||| ||||    ||||| |||||||| ||||| |||||||||||||    
T  24018932 gaaaaaacaatagaatacaaac-ggtgtcacatatatacggaacacccctcaaaagctaaagacaaaaaaccacccaaaataatgatgccggagtatacg 24018834  T
Q  149 aacgtgcaatgcaccaaccgcatacccacacctcacaat 187  Q
     ||| || | |||||| |||||||||||| |||||||||    
T  24018833 cacgggcgaagcaccagccgcatacccacgcctcacaat 24018795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 7277495 - 7277551
Alignment:
Q  343 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtag 399  Q
    ||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||    
T  7277495 tttcaatgcaaaattaattattgtcttgtcaataatgcccttacttatttattgtag 7277551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 12305740 - 12305687
Alignment:
Q  332 tcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttg 385  Q
    ||||||||||  |||||||||||||| |||||||| ||||||||||||||||||    
T  12305740 tcattttcaaagttcaatgcaacattgattattgttttgtcaataatacccttg 12305687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 15629376 - 15629320
Alignment:
Q  308 aataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattatt 364  Q
    ||||||||||||||||  ||||||| ||||| || |||||||||| |||||||||||    
T  15629376 aataattttgtttcactttacttgttatttttaaatttcaatgcagcattaattatt 15629320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 15304822 - 15304884
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  15304822 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 15304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 15305268 - 15305227
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaa 309  Q
    ||||||||||||||||||| ||||| |||||||||| |||||    
T  15305268 tagtactccctccgtttcaaaatacatgtccattttggagaa 15305227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 46694110 - 46694246
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 46694209  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46694210 tcaataatacccttgcatatttattgtagagagagaa 46694246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 269 - 407
Target Start/End: Complemental strand, 13365122 - 13364984
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtct 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  13365122 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgtct 13365023  T
Q  369 tgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  13365022 tgtcaataatacccttgcatatttattgtagagagagaa 13364984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 36881557 - 36881421
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  36881557 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 36881458  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36881457 tcaataatacccttgcatatttattgtagagagagaa 36881421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 29375409 - 29375281
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29375409 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 29375310  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    |||||||| ||||||||||||||||||||    
T  29375309 tcaataatgcccttgcatatttattgtag 29375281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 23087931 - 23088067
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23087931 tacttcctccgtttcataatacttgtcgattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 23088030  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  23088031 tcaataatacccttgcatatttattgtagagagagaa 23088067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 269 - 407
Target Start/End: Complemental strand, 199134 - 198996
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtct 368  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  199134 agtactccctccatttcataatagttgtccattttagaaaataattttgtttcacaatatttgtcattttcaagtttcaatgcaacattaattattgttt 199035  T
Q  369 tgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  199034 tgtcaataatacccttgcatatttattgtagagagagaa 198996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 3383353 - 3383217
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3383353 tactcctttcgttttataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 3383254  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||| |||||||||||||||||| |||||||    
T  3383253 tcaataatactcttgcatatttattgtagagagagaa 3383217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 19241668 - 19241804
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  19241668 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcacttttaagtttcaatgcaacattaattattgacttg 19241767  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19241768 tcaataatacccttgcatgtttattgtagagagagaa 19241804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 32834989 - 32835125
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |||||| |||    
T  32834989 tactccctccgtttcataatacttgtccattgtagagaataatttcgtttcatagtacttgtcattttcaagtttcaatgcaacattaagtattgttttg 32835088  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||  ||||| ||||||| |||||||    
T  32835089 tcaataatacccttaaatattaattgtagagagagaa 32835125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 13703489 - 13703364
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| |||||||||||||||||||||||| |  ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  13703489 tactccatccgtttcataatacttgtccattctgaagaataaatttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtgttg 13703390  T
Q  371 tcaataatacccttgcatatttattg 396  Q
    ||||||||||||||||||||||||||    
T  13703389 tcaataatacccttgcatatttattg 13703364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 286 - 407
Target Start/End: Complemental strand, 43750398 - 43750277
Alignment:
Q  286 ataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttg 385  Q
    ||||||||||||||||||  |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43750398 ataatacttgtccattttttagaataatttggtttctcaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatactcttg 43750299  T
Q  386 catatttattgtagggagagaa 407  Q
    |||||||||||| | |||||||    
T  43750298 catatttattgttgagagagaa 43750277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 48820617 - 48820508
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  48820617 tacttcctccgtttcataatacttgtccattttaaaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgttttg 48820518  T
Q  371 tcaataatac 380  Q
    ||||||||||    
T  48820517 tcaataatac 48820508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 18355868 - 18356004
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||  ||     
T  18355868 tactccctccgtttcacaatacttgtccattttgaagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattgattta 18355967  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| | |||||||||||| |||||||    
T  18355968 tcaataatacccttacttatttattgtagagagagaa 18356004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 294 - 405
Target Start/End: Original strand, 31873886 - 31873996
Alignment:
Q  294 tgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatattta 393  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  31873886 tgtccattttagagaataattttatttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaa-aatacccttatatattta 31873984  T
Q  394 ttgtagggagag 405  Q
    ||| || |||||    
T  31873985 ttgcagagagag 31873996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 48963390 - 48963269
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    ||||| |||||| ||||| || |||||||||||||||||| ||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  48963390 ctccgattcatattacttatctattttagagaataattttatttcataatatttatcatttttaagtttcaatgcaacattaattattgtcttgtcaata 48963291  T
Q  377 atacccttgcatatttattgta 398  Q
    ||| ||||  ||||||||||||    
T  48963290 atatccttatatatttattgta 48963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 48436490 - 48436368
Alignment:
Q  282 tttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacc 381  Q
    ||||| |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||     
T  48436490 tttcacaatatttgtcacttttggagaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattagcttgtcaataataca 48436391  T
Q  382 cttgcatatttattgtagggaga 404  Q
    |||   |||||||||||| ||||    
T  48436390 cttaattatttattgtagagaga 48436368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 6901831 - 6901725
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    |||||||||| |||| ||||||||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||| ||||  || ||||||    
T  6901831 ctccgtttcacaata-ttgtccattttggagaataattttgtttcactttacttgtcacttttaagtttcaatgcaacattaatcattgatttatcaata 6901733  T
Q  377 ataccctt 384  Q
    ||| ||||    
T  6901732 atatcctt 6901725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 54086818 - 54086716
Alignment:
Q  282 tttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacc 381  Q
    ||||| |||||||||||||||| ||||||| ||||||||||   || |||||| |||||||||||||| |||||||||||||||  || |||||||||||    
T  54086818 tttcacaatacttgtccattttggagaatacttttgtttcattttatttgtcactttcaagtttcaatacaacattaattattgatttatcaataatacc 54086719  T
Q  382 ctt 384  Q
    |||    
T  54086718 ctt 54086716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 26783746 - 26783661
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacat 356  Q
    |||| ||||||||| | |||||||||| |||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  26783746 tacttcctccgttttacaatacttgtctattttaaagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacat 26783661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 399
Target Start/End: Original strand, 27706999 - 27707116
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    ||||||||||| || |||||| |  | ||||||||| |||||||||| || ||| |||||| ||| |||| |||||||| ||||||||||||||||||||    
T  27706999 gtttcataatatttatccattctgaaaaataattttatttcacaatatttatcactttcaaattttaatgtaacattaactattgtcttgtcaataatac 27707098  T
Q  381 ccttgcatatttattgtag 399  Q
    || | ||||||||||||||    
T  27707099 cc-tacatatttattgtag 27707116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 52009105 - 52009183
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | || | |||||||||||| ||||    
T  52009105 tacttgtcactttcaagtttcgatgcaacattaattattgtcttgtcaataataacattacctatttattgtagagaga 52009183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 24064488 - 24064364
Alignment:
Q  280 cgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataata 379  Q
    ||||||| ||||| ||||  |||| |||||||||||| ||||||  ||| ||||| |||||||||| |||| ||||||||||||||  || |||||||||    
T  24064488 cgtttcacaatacatgtcgtttttggagaataattttatttcactttacatgtcactttcaagttttaatgtaacattaattattggtttatcaataata 24064389  T
Q  380 cccttgcatatttattgtagggagagaa 407  Q
       || | |||||||||||| |||||||    
T  24064388 ---ttacctatttattgtagagagagaa 24064364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 1455186 - 1455257
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||| ||||||| ||  ||||||||| |||| | |||||||||||||||||||||||  ||||||||||    
T  1455186 agaataaatttgttttactttacttgtcactttccaatttcaatgcaacattaattattggtttgtcaataa 1455257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 53559648 - 53559739
Alignment:
Q  308 aataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtag 399  Q
    |||||||||||||||   ||||||||| | ||||||||||||||||||||||| ||||  || | ||||||||  || | ||||||||||||    
T  53559648 aataattttgtttcaatttacttgtcactctcaagtttcaatgcaacattaatcattgatttattaataatactgttacttatttattgtag 53559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 19912215 - 19912153
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  19912215 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 19912153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 38806382 - 38806320
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  38806382 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 38806320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 52805082 - 52805156
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagg 400  Q
    ||||||||| ||||||||||| |||||||||| |||||||  || ||||||| |||||| | |||| ||||||||    
T  52805082 tacttgtcactttcaagtttcgatgcaacatttattattgatttatcaataacacccttacttattaattgtagg 52805156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 37293644 - 37293552
Alignment:
Q  312 attttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||   ||||||||  ||||||||||||||||||||||||||  |   || |||||| ||||||| | |||||||||||| |||||||    
T  37293644 attttgtttcattttacttgtccctttcaagtttcaatgcaacattaattgat---ttatcaatattacccttacctatttattgtagagagagaa 37293552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 46188967 - 46188907
Alignment:
Q  347 aatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||| ||||||||||||||  ||||||||||||  ||||| |||||||||||| |||||||    
T  46188967 aatgtaacattaattattggtttgtcaataatattcttgcttatttattgtagagagagaa 46188907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 51584490 - 51584442
Alignment:
Q  328 cttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    |||||||| ||||| |||||||| ||||||||||||||| |||||||||    
T  51584490 cttgtcatattcaaatttcaatgtaacattaattattgttttgtcaata 51584442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 37781148 - 37781085
Alignment:
Q  336 tttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtag 399  Q
    |||||| ||||||| |||  ||||||||||  |||||||||||||||||  |||||||||||||    
T  37781148 tttcaaatttcaatccaaagttaattattggtttgtcaataatacccttaaatatttattgtag 37781085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 12095464 - 12095402
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||||| ||||  ||||||||||||||||   |||||||||| ||||| ||||    
T  12095464 tactccctccgtttcaaaatatatgtccattttagagaaattttttgtttcaaaatacatgtc 12095402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 44276775 - 44276837
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    ||||| |||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  44276775 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 44276837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 40228280 - 40228337
Alignment:
Q  347 aatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||| ||||| ||||| || ||| | |||||||||||| ||||    
T  40228280 aatgcaacattaattattggcttgttaataaaactcttacttatttattgtagagaga 40228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 37293437 - 37293469
Alignment:
Q  271 tactccctccgtttcataatacttgtccatttt 303  Q
    |||||||||||||||| ||||||||||||||||    
T  37293437 tactccctccgtttcacaatacttgtccatttt 37293469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 40783657 - 40783793
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40783657 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 40783756  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40783757 tcaataatacccttgcatatttattgtagagagagaa 40783793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 23045279 - 23045415
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 23045378  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  23045379 tcaataatacccttgcatatttattgtagagagagaa 23045415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 321903 - 321770
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaatatttttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 321804  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||| ||||    
T  321803 tcaataatacccttgcatatttattgtagagaga 321770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 47037852 - 47037988
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47037852 tactccctccgtttcataatacttgtctattttaaagaataattttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 47037951  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47037952 tcaataatacccttgcatatttattgtagagagagaa 47037988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 284610 - 284475
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||     
T  284610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgactta 284511  T
Q  371 tcaataatacccttgcatatttattgtagggagaga 406  Q
    ||||||||||||||||||||||||||||| ||||||    
T  284510 tcaataatacccttgcatatttattgtagagagaga 284475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 23526516 - 23526388
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23526516 tactccctccgtttcataatacttgtccattttgaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 23526417  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    |||||||||||||| ||||||||||||||    
T  23526416 tcaataatacccttacatatttattgtag 23526388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 27210961 - 27211090
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  27210961 ctccgtttcataatatttgtccatttttaagaataattttgtttcacaatacttgtcacatttaagtttcaatgcaacattaattattgtcttgtcaata 27211060  T
Q  377 atacccttgcatatttattgtagggagaga 406  Q
    |||||||||||||||||||| || ||||||    
T  27211061 atacccttgcatatttattgcagagagaga 27211090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 24771901 - 24772034
Alignment:
Q  266 catagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattg 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||    
T  24771901 cataatactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattg 24772000  T
Q  366 tcttgtcaataatacccttgcatatttattgtag 399  Q
    | || ||||||||| ||||  |||||||||||||    
T  24772001 ttttttcaataatagccttaaatatttattgtag 24772034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 33083021 - 33082893
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  |||||| ||||||||||| |||||||||||||||     
T  33083021 tactccctccgtttcataatacttgtccattttaaagaataattttgtttcacaatacatgtctctttcaaatttcaatgcaatattaattattgtcttc 33082922  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    ||||||||||||||  |||||||||||||    
T  33082921 tcaataatacccttaaatatttattgtag 33082893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 407
Target Start/End: Complemental strand, 46771910 - 46771779
Alignment:
Q  276 cctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaat 375  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  46771910 cctccgtttcataatacttgttcattttgaagaataattttgtttcacaatacttatcactttcaagtttcaatgtaacattaattattttcttgtcaat 46771811  T
Q  376 aatacccttgcatatttattgtagggagagaa 407  Q
    ||||| ||| |||||||||||||| |||||||    
T  46771810 aatactcttacatatttattgtagagagagaa 46771779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 278 - 396
Target Start/End: Original strand, 40562293 - 40562410
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  40562293 tccgttttataatacttgtccattttgaagaatgattttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaatga 40562392  T
Q  378 tacccttgcatatttattg 396  Q
    || ||||||||||||||||    
T  40562393 ta-ccttgcatatttattg 40562410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 306 - 407
Target Start/End: Original strand, 40261320 - 40261421
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagag 405  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||    
T  40261320 agaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatacccttacatatttattgtagagagag 40261419  T
Q  406 aa 407  Q
    ||    
T  40261420 aa 40261421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 51064754 - 51064890
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||| |||||||||   ||     
T  51064754 tactccgtctgtttcacaatacttgtccattttagagaataattttgtttcactttatttgtcactttcaagtttcaatgcaacgttaattattagttta 51064853  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| | |||||||||||| |||||||    
T  51064854 tcaataatacccttacctatttattgtagagagagaa 51064890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 31003787 - 31003923
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||| |||||| ||||||| ||  |||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||  |||    
T  31003787 tactccctctgtttcacaatacttatcgcttttggagaataattttgtttcacattacttgccactttcaagtttcaatgcaacattaattgttggtttg 31003886  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    || ||||||||||| | |||||||||||| |||||||    
T  31003887 tccataatacccttacctatttattgtagagagagaa 31003923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 407
Target Start/End: Complemental strand, 18396973 - 18396835
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtct 368  Q
    |||||||||||| ||||| |||||||||   |||| |||||||||||||||| |||  | |||||| |||||||||||||||||||||||||||||| ||    
T  18396973 agtactccctccatttcacaatacttgttgcttttggagaataattttgttttacataatttgtcactttcaagtttcaatgcaacattaattattgact 18396874  T
Q  369 tgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    | |||||||| ||||| | |||||||||||| |||||||    
T  18396873 tttcaataattcccttacttatttattgtagagagagaa 18396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 268 - 407
Target Start/End: Original strand, 27143011 - 27143148
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||| |||| ||||||||| |||||  |||| |||||||||||||||||||| ||||||||| |  ||||||||||| |||||||||||||||      
T  27143011 tagtactccatccgcttcataataattgtcgcttttggagaataattttgtttcacattacttgtcact--caagtttcaatacaacattaattattggt 27143108  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||| | |||||| ||||| |||||||    
T  27143109 ttgtcaataatacccttacctatttactgtagagagagaa 27143148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 14925734 - 14925613
Alignment:
Q  276 cctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaat 375  Q
    ||||||||||| ||||||||||  |||||||| |||||||||||||||  |||||||| |||||||||||||||||||| |||  |||||  ||||||||    
T  14925734 cctccgtttcacaatacttgtcgtttttagagcataattttgtttcactttacttgtcgttttcaagtttcaatgcaacctta--tattggtttgtcaat 14925637  T
Q  376 aatacccttgcatatttattgtag 399  Q
    ||||| ||| | ||||||||||||    
T  14925636 aatactcttacctatttattgtag 14925613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 40052501 - 40052597
Alignment:
Q  308 aataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||||||||| | |||| |||||||| ||| ||||    
T  40052501 aataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatatcgttgcttatttattatagagaga 40052597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 407
Target Start/End: Original strand, 34458723 - 34458860
Alignment:
Q  270 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtctt 369  Q
    ||||||| ||||||||| ||||  ||||  |||| |||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||  ||    
T  34458723 gtactccttccgtttcacaatatatgtcgcttttggagaataattttgtttcactttacttgtcactttcaagtttcgatgcaacattaattattggttt 34458822  T
Q  370 gtcaataatacccttgcatatttattgtagggagagaa 407  Q
      | ||||||||||| |||||| ||| ||| |||||||    
T  34458823 accgataatacccttacatattcattatagagagagaa 34458860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 380
Target Start/End: Original strand, 23166858 - 23166960
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||||| |||||| |||  ||||||||||||||||||||||||| || || | | |||||||||||||| |||||||||||||||  ||||||||||    
T  23166858 tccgtttcacaatactcgtcgcttttagagaataattttgtttcacattatttattactttcaagtttcaatacaacattaattattgatttgtcaataa 23166957  T
Q  378 tac 380  Q
    |||    
T  23166958 tac 23166960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 278 - 395
Target Start/End: Complemental strand, 24876831 - 24876714
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||| ||| ||||||||||  |||| ||||||||||||||||||   ||||||||| |||||||| ||||||| |||||||||||||  ||||||||||    
T  24876831 tccgtctcacaatacttgtcgtttttggagaataattttgtttcattttacttgtcactttcaagtgtcaatgcgacattaattattggtttgtcaataa 24876732  T
Q  378 tacccttgcatatttatt 395  Q
    ||| ||| | ||||||||    
T  24876731 tactcttacttatttatt 24876714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 31061463 - 31061587
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatact---tgtcattttcaagtttcaatgcaacattaattattgtcttgtcaa 374  Q
    ||||||||| ||||||||||  |||| || ||||||||| ||||||| ||||   ||||| | ||||||||||||||||||||||||||||  ||| |||    
T  31061463 tccgtttcacaatacttgtcacttttggaaaataattttatttcacattactacttgtcactctcaagtttcaatgcaacattaattattggtttgacaa 31061562  T
Q  375 taatacccttgcatatttattgtag 399  Q
    |||||||||  |||||||| |||||    
T  31061563 taataccctcacatatttactgtag 31061587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 25929368 - 25929248
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||||| ||||||||||  ||||| |||||||||||||||||    ||||| |  ||||||||||||| |||||||||| |||||  || |||||||    
T  25929368 tccgtttcacaatacttgtcgcttttaaagaataattttgtttcatttcacttgcccctttcaagtttcaacgcaacattaaatattgatttatcaataa 25929269  T
Q  378 tacccttgcatatttattgta 398  Q
    |||||||   |||||||||||    
T  25929268 tacccttatctatttattgta 25929248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 1749515 - 1749457
Alignment:
Q  307 gaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattg 365  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||    
T  1749515 gaataattttgtttcacaatacttgttacttttaagtttcaatgcaacattagttattg 1749457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 1837827 - 1837940
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaa---tacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    |||||| ||||||||||||||| |||   ||||  |||||||||||||||||  |   ||||||||| ||| ||||||||||||||||||||||||||      
T  1837827 tactccatccgtttcataatacatgtt--ttttgaagaataattttgtttcaataatttacttgtcacttttaagtttcaatgcaacattaattattgat 1837924  T
Q  368 ttgtcaataataccct 383  Q
    || |||||||||||||    
T  1837925 ttatcaataataccct 1837940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 3657282 - 3657217
Alignment:
Q  340 aagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagag 405  Q
    ||||||||||||||||||||||||||  |||||||||||||  || | |||||||||||| |||||    
T  3657282 aagtttcaatgcaacattaattattggtttgtcaataatacttttacctatttattgtagagagag 3657217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 3943807 - 3943742
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    ||||||||||||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  3943807 tagtactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 3943742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 14350510 - 14350565
Alignment:
Q  307 gaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaatta 362  Q
    |||||||||||||| | | ||||||||| ||| |||||||||||||||||||||||    
T  14350510 gaataattttgttttatattacttgtcactttaaagtttcaatgcaacattaatta 14350565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 41959850 - 41959788
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  41959850 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 41959788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 44227848 - 44227915
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcatttt 338  Q
    |||||||||||||||| ||||| |||||||||| |||||   |||||||||| ||| | |||||||||    
T  44227848 tactccctccgtttcaaaatacatgtccattttggagaaattttttgtttcaaaatgcatgtcatttt 44227915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 51065033 - 51064995
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaa 309  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  51065033 tactccctccgtttcacaatacttgtccattttaaagaa 51064995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 9589672 - 9589615
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 328  Q
    |||||||||||||||| ||||| |||| |||||||||||   |||||||||| |||||    
T  9589672 tactccctccgtttcaaaatacatgtctattttagagaaattttttgtttcaaaatac 9589615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 49756684 - 49756724
Alignment:
Q  344 ttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  49756684 ttcaatgcaacaataattattgttttgtcaattataccctt 49756724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 21310698 - 21310565
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21310698 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 21310599  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||| ||||    
T  21310598 tcaataatacccttgcatatttattgtagagaga 21310565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 12071837 - 12071701
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattcttgtcttg 12071738  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12071737 tcaataatacccttgcatatttattgtagagagagaa 12071701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 14261321 - 14261185
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  14261321 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 14261222  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  14261221 tcaataatacccttgcatatttattgtagagagagaa 14261185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 22321268 - 22321404
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22321268 tactccctccgtttcataatacttgtctattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 22321367  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22321368 tcaataatacccttgcatatttattgtagagagagaa 22321404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 24706247 - 24706383
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  24706247 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 24706346  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24706347 tcaataatacccttgcatatttattgtagagagagaa 24706383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 269 - 404
Target Start/End: Original strand, 40122485 - 40122620
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtct 368  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40122485 agtactctctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtct 40122584  T
Q  369 tgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40122585 tgtcaataatacccttgcatatttattgtagagaga 40122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 25704928 - 25704795
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25704928 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcagtgcaacattaattattgtcttg 25704829  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||| ||||    
T  25704828 tcaataatacccttgcatatttattgtagagaga 25704795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 44569114 - 44568978
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  44569114 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcatgtttcaatgcaacattaattattgtcttg 44569015  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44569014 tcaataatacccttgcatatttattgtagagagagaa 44568978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 273 - 407
Target Start/End: Original strand, 21661537 - 21661671
Alignment:
Q  273 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtc 21661636  T
Q  373 aataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||| |||||||    
T  21661637 aataatacccttgcatatttattgtagagagagaa 21661671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 273 - 407
Target Start/End: Original strand, 21670301 - 21670435
Alignment:
Q  273 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtc 21670400  T
Q  373 aataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||| |||||||    
T  21670401 aataatacccttgcatatttattgtagagagagaa 21670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 281 - 404
Target Start/End: Complemental strand, 50768129 - 50768006
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataattttgtttcacaatatttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatac 50768030  T
Q  381 ccttgcatatttattgtagggaga 404  Q
    |||| |||||||||||||| ||||    
T  50768029 ccttacatatttattgtagagaga 50768006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 20249014 - 20249150
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||||    
T  20249014 tactcactccgtttcataatacttgtccattttggagaataattttgtttcacaatacctgtctctttcaagtttcaatgcaatattaattattgtcttg 20249113  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| |||||||||||||| |||||||    
T  20249114 tcaataatacccttacatatttattgtagagagagaa 20249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 21065037 - 21064905
Alignment:
Q  272 actccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgt 371  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||||||||     
T  21065037 actccctccgtttcataatacttgttcattttagagaataattttgtttcacaatacttatcgctttcaaatttcaatgcaacattaattattgtcttga 21064938  T
Q  372 caataatacccttgcatatttattgtagggaga 404  Q
    ||||||||| ||| |||||||||||||| ||||    
T  21064937 caataatactcttacatatttattgtagagaga 21064905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 19693002 - 19692863
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||      
T  19693002 tagtactccatccgtatcacaatacttgtctattttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggt 19692903  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    || ||||||| |||||| | |||||||||||| |||||||    
T  19692902 ttatcaataacacccttacttatttattgtagagagagaa 19692863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 19703587 - 19703448
Alignment:
Q  268 tagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtc 367  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||      
T  19703587 tagtactccatccgtatcacaatacttgtctattttagagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggt 19703488  T
Q  368 ttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    || ||||||| |||||| | |||||||||||| |||||||    
T  19703487 ttatcaataacacccttacttatttattgtagagagagaa 19703448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 31892493 - 31892384
Alignment:
Q  287 taatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgc 386  Q
    ||||||||||| || || |||||||||||||||| ||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||||| ||||||    
T  31892493 taatacttgtctatcttggagaataattttgttttacaatacttgtcacttttaagttttaatgtaacattaattattgtcttgtcaataatagccttgc 31892394  T
Q  387 atatttattg 396  Q
    ||||||||||    
T  31892393 atatttattg 31892384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 18507276 - 18507402
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    |||||| ||||||||||  |||||||| |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||     
T  18507276 gtttcacaatacttgtcgcttttagagcataattttgtttcacatttcttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatat 18507375  T
Q  381 ccttgcatatttattgtagggagagaa 407  Q
     ||| | |||||||| ||| |||||||    
T  18507376 tcttacttatttattatagagagagaa 18507402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 50839031 - 50839125
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattg 365  Q
    |||||||||| ||||| ||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50839031 tactccctccatttcacaatacttgtcgcttttggagaataattttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattg 50839125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 6128956 - 6129085
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||||| ||||| ||||  ||||  |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||  || |||||||    
T  6128956 tccgtttcacaatacatgtcgcttttgaagaataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataa 6129055  T
Q  378 tacccttgcatatttattgtagggagagaa 407  Q
    |||||||   |||||||||||| |||||||    
T  6129056 tacccttatctatttattgtagagagagaa 6129085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 34324627 - 34324719
Alignment:
Q  316 tgtttcacaatacttgtc-attttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||| |||||||||| |||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  34324627 tgtttcataatacttgtccattttagagtttcaatgcaacattaatgattttcttgtcaataatacccttgcatatttattgtagagagagaa 34324719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 32543756 - 32543628
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| || |||||| ||||||||||  |||||||||||||||||||||||   ||||||| | |||||||||| ||||| |||||||||||||  |||    
T  32543756 tactccttctgtttcacaatacttgtcgcttttagagaataattttgtttcattttacttgttactttcaagttttaatgcgacattaattattggtttg 32543657  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    ||| ||||||||||   ||||||||||||    
T  32543656 tcattaatacccttatctatttattgtag 32543628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 48652472 - 48652379
Alignment:
Q  300 ttttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatattta 393  Q
    |||| |||||||||||||||||||  ||||||| | ||| |||||| ||||| |||||||||||||  || | |||||||||||| | ||||||    
T  48652472 ttttggagaataattttgtttcactttacttgttactttaaagttttaatgcgacattaattattgatttattaataatacccttacctattta 48652379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 20714322 - 20714413
Alignment:
Q  273 ctccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattatt 364  Q
    |||||| ||||||| ||||  ||||  ||||||||||||| ||| ||||| | || || ||||||| || ||||||||||||||||||||||    
T  20714322 ctccctacgtttcacaatatctgtcacttttagagaataaatttatttcatattatttatcatttttaaatttcaatgcaacattaattatt 20714413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 17038355 - 17038410
Alignment:
Q  326 tacttgtcatttt-caagtttcaatgcaacattaattattgtcttgtcaataatacc 381  Q
    |||||||||||||  ||||||| |||||||||||||||||||||| |||||||||||    
T  17038355 tacttgtcattttgaaagtttc-atgcaacattaattattgtcttatcaataatacc 17038410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 39295453 - 39295418
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttaga 306  Q
    |||||| |||||||||||||||||||||||||||||    
T  39295453 tactccttccgtttcataatacttgtccattttaga 39295418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 20714426 - 20714462
Alignment:
Q  348 atgcaacattaattattgtcttgtcaataataccctt 384  Q
    ||||||||||||||||||  |||||||||||||||||    
T  20714426 atgcaacattaattattggtttgtcaataataccctt 20714462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 26676644 - 26676716
Alignment:
Q  335 ttttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||| ||||||||| |||||||||  || |||||||||| |||   |||||||||| | |||||||    
T  26676644 ttttcaagttttaatgcaacaataattattgatttatcaataatactcttatctatttattgtggagagagaa 26676716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 34324618 - 34324654
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagag 307  Q
    |||||| || |||||||||||||||||||||||||||    
T  34324618 tactccatctgtttcataatacttgtccattttagag 34324654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 22388138 - 22388271
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22388138 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 22388237  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||| ||||    
T  22388238 tcaataatacccttgcatatttattgtagagaga 22388271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 23367066 - 23366930
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  23367066 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatacaacattaattattgtcttg 23366967  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  23366966 tcaataatacccttgcatatttattgtagagagagaa 23366930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 3519184 - 3519048
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  3519184 tacttcctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgtaacattaattattgtcttg 3519085  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3519084 tcaataatacccttgcatatttattgtagagagagaa 3519048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 1102788 - 1102645
Alignment:
Q  261 cctaacatagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaat 360  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  1102788 cctaacataatactccctccgtttcataatacttgtccatttgagagaataattttgtttcacaatactcgtcactttcaagtttcaatgcaacattaat 1102689  T
Q  361 tattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  1102688 tattgtcttgtcaataacacccttgcatatttattgtagagaga 1102645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 39938447 - 39938311
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  39938447 tactccctccgttttataatacttgtccattttagagaataattttgtttcacaatacttgtcacttttaagttttaatgcaacattaattattgtcttg 39938348  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39938347 tcaataatacccttgcatatttattgtagagagagaa 39938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 1646564 - 1646428
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataattttgtttcacaatacttatcactttcaagtttcaatgcaacattaagtattatcttg 1646465  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1646464 tcaataatacccttgcatatttattgtagagagagaa 1646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 37673743 - 37673876
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  37673743 tactccttccgtttcataatacttgtccattttagagaataactttgtttcaaaatacttgtcacttccaagtttcaatgcaacattaattattgtcttg 37673842  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||||||||||||| ||||    
T  37673843 tcaataatacccttgcatatttattgtagagaga 37673876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 12969740 - 12969876
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||     
T  12969740 tactccctccgtttcataatacttgtccattttggagaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattgtcttc 12969839  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||  ||||||||||||| |||||||    
T  12969840 tcaataatacccttaaatatttattgtagagagagaa 12969876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 40756911 - 40757024
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||  ||     
T  40756911 tactccctccgtttcataatacttgtccattttggagaataattttgtttcactttagttgtcactttcaagtttcaatgcaacattaattattggttta 40757010  T
Q  371 tcaataataccctt 384  Q
    ||||||||||||||    
T  40757011 tcaataataccctt 40757024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 271 - 396
Target Start/End: Original strand, 28110095 - 28110220
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||||||||||| |||| || ||  |||| ||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||     
T  28110095 tacttcctccgtttcacaatatttatcgtttttggagaaaaaacttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattggttta 28110194  T
Q  371 tcaataatacccttgcatatttattg 396  Q
    |||||||||||||| |||||||||||    
T  28110195 tcaataatacccttacatatttattg 28110220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 39561894 - 39562023
Alignment:
Q  270 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtctt 369  Q
    ||||||||||||||||| ||||| ||||  |||| |||||||||||||||||||     |||||| ||| || |||||||||||||||||||||||  ||    
T  39561894 gtactccctccgtttcacaatacatgtcgtttttggagaataattttgtttcac-----ttgtcacttttaaatttcaatgcaacattaattattggttt 39561988  T
Q  370 gtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||| | |||||||||||| ||||    
T  39561989 gtcaataatacccttacttatttattgtagagaga 39562023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 277 - 404
Target Start/End: Original strand, 37284525 - 37284650
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaata 376  Q
    |||||||||| ||||||| ||  |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||  || ||| ||    
T  37284525 ctccgtttcacaatactt-tctcttttggagaataattttgtttcactttacttgtcattttcaagtttcaatgcaacatt-attattgatttatcacta 37284622  T
Q  377 atacccttgcatatttattgtagggaga 404  Q
    |||| ||| | |||||||||||| ||||    
T  37284623 atactcttacctatttattgtagagaga 37284650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 36447532 - 36447426
Alignment:
Q  274 tccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtca 373  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||||||||  || | |||| |||||| |||||||||||  ||||||||||  || |||    
T  36447532 tccctccgtttcacaatacatgtcgcttttagagaataattttgtttcactttattcgtcactttcaaatttcaatgcaatgttaattattggtttatca 36447433  T
Q  374 ataatac 380  Q
    |||||||    
T  36447432 ataatac 36447426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 19976568 - 19976470
Alignment:
Q  308 aataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagaga 406  Q
    |||||||||||||||   ||||||||| |||||||||||||||||||||||||||||   || ||||||||| | ||   |||||||||||| ||||||    
T  19976568 aataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattagtttatcaataatatcattatctatttattgtagagagaga 19976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 34242221 - 34242115
Alignment:
Q  301 tttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagg 400  Q
    ||||||||||||||||||||||   |||| |||| ||| |||||| ||||||| ||||| |||||  || ||||||||| |||| | ||||||||||||     
T  34242221 tttagagaataattttgtttcattttactggtcacttttaagttttaatgcaatattaaatattggtttatcaataatatccttacctatttattgtaga 34242122  T
Q  401 gagagaa 407  Q
    |||||||    
T  34242121 gagagaa 34242115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 28401400 - 28401462
Alignment:
Q  336 tttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgta 398  Q
    ||||||||||||| || |||||||||||||  ||||||||||||||||||| || ||||||||    
T  28401400 tttcaagtttcaaggccacattaattattgatttgtcaataatacccttgcctaattattgta 28401462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 32838964 - 32839022
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattatt 364  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||| ||||||||||    
T  32838964 agaataattttgtttcattttacttgtcactttcaagtttcaatgcaatattaattatt 32839022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 4918031 - 4917910
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||||||| |||| |||||  ||||  | || ||||||| |||||| ||||||||| |||| | ||| ||| ||||||||||||||| ||||||||||     
T  4918031 tccgtttcacaatatttgtcatttttgaaaaacaattttgcttcacattacttgtcactttcgaattttaattcaacattaattattggcttgtcaatag 4917932  T
Q  378 tacccttgcatatttattgtag 399  Q
    | ||||| | ||||||| ||||    
T  4917931 ttcccttacctatttatggtag 4917910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 14780023 - 14779964
Alignment:
Q  300 ttttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaa 359  Q
    |||| ||||||||||||||||||   ||||||||| |||||||||||||||||| |||||    
T  14780023 ttttggagaataattttgtttcattttacttgtcactttcaagtttcaatgcaagattaa 14779964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 1002786 - 1002867
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||||| | |||||||||||||||||||||  || | ||| ||| ||||   |||||||||||| |||||||    
T  1002786 tacttgtcattttcaaatctcaatgcaacattaattattggtttattaattatatccttatctatttattgtagagagagaa 1002867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 32323691 - 32323746
Alignment:
Q  329 ttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    ||||| |||||||  ||||||||||||| ||||||||| ||||||| |||||||||    
T  32323691 ttgtcgttttcaaagttcaatgcaacatcaattattgttttgtcaaaaataccctt 32323746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 1102501 - 1102541
Alignment:
Q  269 agtactccctccgtttcataatacttgtccattttagagaa 309  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  1102501 agtactccctccgtttcaaaatacatgtccattttggagaa 1102541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 27814088 - 27813952
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  27814088 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtgttg 27813989  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27813988 tcaataatacccttgcatatttattgtagagagagaa 27813952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 36453124 - 36453260
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36453124 tactctctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 36453223  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36453224 tcaataatacccttgcatatttattgtagagagagaa 36453260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 267 - 406
Target Start/End: Complemental strand, 10981789 - 10981650
Alignment:
Q  267 atagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgt 366  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10981789 atagtactccctccatttcataatatttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgt 10981690  T
Q  367 cttgtcaataatacccttgcatatttattgtagggagaga 406  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  10981689 cttgtcaataatacccttgcatatttattgtagagagaga 10981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 25614353 - 25614489
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  25614353 tactccctccgtttcataataattgtccattttagagaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtcttg 25614452  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  25614453 tcaataatacccttgcatatttattgtagagagagaa 25614489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 47110727 - 47110591
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47110727 tactccctccgtttcataatacttattcattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 47110628  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47110627 tcaataatacccttgcatatttattgtagagagagaa 47110591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 40349238 - 40349104
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| | |    
T  40349238 tactccctccgtttcataatacttgtccattttagagaataattt-gtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtttgg 40349140  T
Q  371 tcaataatacccttgcatatttattgtagggagaga 406  Q
    ||||||||||||||||||||||||||||| ||||||    
T  40349139 tcaataatacccttgcatatttattgtagagagaga 40349104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 16662370 - 16662242
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||| ||||| ||||||||||  ||||  ||||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||  |||    
T  16662370 tactccctccatttcacaatacttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttg 16662271  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    ||| |||||||||| | ||||||||||||    
T  16662270 tcattaatacccttacctatttattgtag 16662242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 17636730 - 17636602
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||| ||||| ||||||||||  ||||  ||||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||  |||    
T  17636730 tactccctccatttcacaatacttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttg 17636631  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    ||| |||||||||| | ||||||||||||    
T  17636630 tcattaatacccttacctatttattgtag 17636602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 27941013 - 27941112
Alignment:
Q  300 ttttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtag 399  Q
    |||| ||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||    
T  27941013 ttttggagaacaattttgtttcacattacttgtcactttcaagtttcattgcaacattaattattggcttgtcaataatacccttacttatttattgtag 27941112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 3091755 - 3091657
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||| |||||||||||||| ||||    
T  3091755 agaataattttgtttcactttacttgtcatttttaagtttcaatgcaacattaaatattggtttgtcaataatacccttacatatttattgtagagaga 3091657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 404
Target Start/End: Original strand, 24456800 - 24456898
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    ||||||||||||||| ||  ||||||||| | |||||||||||||||||||||| || |   || |||||||||||||||| ||| |||||||| ||||    
T  24456800 agaataattttgtttaactttacttgtcactctcaagtttcaatgcaacattaactactaatttatcaataatacccttgcctatgtattgtagagaga 24456898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 16360653 - 16360521
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| || |||||| |||| |||||  |||| ||||||||||| | |||||  ||||||||| |||||||||||||| ||||||||| |||||  |||    
T  16360653 tactccttctgtttcacaatatttgtcgtttttggagaataattt-gcttcactttacttgtcactttcaagtttcaatacaacattaaatattggtttg 16360555  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||| |   |||  |||||| ||||||||||||||    
T  16360554 tcaatact---cttttatattttttgtagggagagaa 16360521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 6737306 - 6737252
Alignment:
Q  332 tcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgc 386  Q
    ||||||||||  |||||||||| |||||||||||| || ||||||||||||||||    
T  6737306 tcattttcaaagttcaatgcaatattaattattgttttatcaataatacccttgc 6737252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 7743433 - 7743492
Alignment:
Q  306 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattg 365  Q
    ||||||||||| ||||||  || |||||||||| ||||||||||||||  ||||||||||    
T  7743433 agaataattttatttcactttatttgtcatttttaagtttcaatgcaatgttaattattg 7743492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 8380157 - 8380082
Alignment:
Q  329 ttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggaga 404  Q
    |||||| ||| |||||||||| |||||||| ||||||  |||| || ||||||||| | |||||||||||| ||||    
T  8380157 ttgtcacttttaagtttcaatacaacattagttattggtttgttaaaaatacccttacttatttattgtagagaga 8380082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 41480694 - 41480639
Alignment:
Q  329 ttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    |||||||||| ||  |||||||||| ||||| |||||| |||||||||||||||||    
T  41480694 ttgtcattttgaaagttcaatgcaatattaactattgttttgtcaataataccctt 41480639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 25059456 - 25059512
Alignment:
Q  277 ctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  25059456 ctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 25059512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 8626759 - 8626623
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  8626759 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttg 8626660  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8626659 tcaataatacccttgcatatttattgtagagagagaa 8626623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 13757484 - 13757348
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13757484 tactccatccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttg 13757385  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13757384 tcaataatacccttgcatatttattgtagagagagaa 13757348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 1605855 - 1605719
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  1605855 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcactttcaaatttcaatacaacattaattattgtcttg 1605756  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1605755 tcaataatacccttgcatatttattgtagagagagaa 1605719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 29260469 - 29260333
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatacttgtcattttcaagtttcaatgcaacattaattactgtcttg 29260370  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||||| |||||||||||||| |||||||    
T  29260369 tcaataatacccttacatatttattgtagagagagaa 29260333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 4129703 - 4129568
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  4129703 tactccctccgtttcataatacttgtccattttagaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttg 4129605  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4129604 tcaataatacccttgcatatttattgtagagagagaa 4129568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 15064695 - 15064831
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15064695 tactccctccgtttcataatacttgtccattttggagaataattttgtttcataatacttgtcactttcaagtttcaatacaacattaattattgtcttg 15064794  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15064795 tcaataatacccttgcatatttattgtagagagagaa 15064831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 7761581 - 7761443
Alignment:
Q  267 atagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||| |    
T  7761581 atagtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatatttgtcactttcaagtttcaatgcaatattaattattat 7761482  T
Q  367 cttgtcaataatacccttgcatatttattgtagggagag 405  Q
     |||||||||||||||||||||||||||||||| |||||    
T  7761481 tttgtcaataatacccttgcatatttattgtagagagag 7761443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 270 - 407
Target Start/End: Original strand, 31559737 - 31559874
Alignment:
Q  270 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtctt 369  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  31559737 gtactccctccgtttcataatacttctccattttagagaataattttattttacaatacttgttactttcaagtttcaatgcaacattaattattgtctt 31559836  T
Q  370 gtcaataatacccttgcatatttattgtagggagagaa 407  Q
    || ||||||||||||||||||||||||||| |||||||    
T  31559837 gttaataatacccttgcatatttattgtagagagagaa 31559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 17942720 - 17942587
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||    
T  17942720 tactccctccgtttcataatacttgtccattttggagaataattttgttttataatacttgtcactttcaagtttcaatgcaacattaattattgttttg 17942621  T
Q  371 tcaataatacccttgcatatttattgtagggaga 404  Q
    |||||||||||||| |||||||||||||| ||||    
T  17942620 tcaataatacccttacatatttattgtagagaga 17942587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 8235895 - 8235769
Alignment:
Q  278 tccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  8235895 tccgtttcataatacttgtctattttagagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaatattaattattgtcttatcaataa 8235796  T
Q  378 tacccttgcatatttattgtagggaga 404  Q
    ||||||| |||||||||||||| ||||    
T  8235795 tacccttacatatttattgtagagaga 8235769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 30734483 - 30734619
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||||| |||||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||     
T  30734483 tacttcctccttttcataatacttgtccattttggaaaataattttgttttacaatagttgtcattttcaaatttcaatgcaacattaattattatctta 30734582  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30734583 tcaataatacccttgcatatttattgtagagagagaa 30734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 395
Target Start/End: Original strand, 20398238 - 20398362
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||| ||||||| ||||| ||||  |||| || ||||||||||||||||  |||||| || |||||||||| ||||||||||||||||||   |||    
T  20398238 tactcccttcgtttcacaatacatgtcacttttggaaaataattttgtttcactttacttgccactttcaagttttaatgcaacattaattattaaattg 20398337  T
Q  371 tcaataatacccttgcatatttatt 395  Q
    |||||||||||||| | ||||||||    
T  20398338 tcaataatacccttacctatttatt 20398362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 26861031 - 26860917
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    |||||| ||||| ||||  |||| |||||||| ||||||||||  ||||||||||||||| |||||||| ||||||| |||||||  |||||||||||||    
T  26861031 gtttcacaatacatgtcatttttggagaataagtttgtttcactttacttgtcattttcatgtttcaatacaacattgattattgatttgtcaataatac 26860932  T
Q  381 ccttgcatatttatt 395  Q
    | || | ||||||||    
T  26860931 ctttacctatttatt 26860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 395
Target Start/End: Complemental strand, 3798376 - 3798252
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    ||||||||| | |||||||||  ||||  ||||| | |||| |||||||||||  ||||||||| |||||||||| |||||||||||||||||    ||     
T  3798376 tactccctctgcttcataatatatgtcgtttttaaataatagttttgtttcactttacttgtcactttcaagttttaatgcaacattaattatgagttta 3798277  T
Q  371 tcaataatacccttgcatatttatt 395  Q
    |||||||||||||| | ||||||||    
T  3798276 tcaataatacccttacctatttatt 3798252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 847831 - 847900
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttatt 395  Q
    ||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| |||  |||||||||    
T  847831 tacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactcttaaatatttatt 847900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 1814870 - 1814762
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||| ||| ||||||| ||||| ||||  ||||  ||||||||||| ||||||  ||||||||| ||| || || |||||||||||| |||||||  |||    
T  1814870 tacttccttcgtttcacaatacatgtcacttttgaagaataattttatttcactttacttgtcacttttaatttccaatgcaacattgattattggtttg 1814771  T
Q  371 tcaataata 379  Q
    |||||||||    
T  1814770 tcaataata 1814762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 19996322 - 19996384
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  19996322 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 19996384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 879299 - 879350
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataa 377  Q
    ||||| || |||||||  ||||||||||||||||||||||| ||||||||||    
T  879299 tacttttctttttcaaagttcaatgcaacattaattattgttttgtcaataa 879350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 15064971 - 15064933
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaa 309  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064971 tactccctccgtttcaaaatacatgtccattttagagaa 15064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 438 - 303
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  438 tactccctccgtttcataatacttgtccattttagaaaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttg 340  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||||| |||||||    
T  339 tcaataatacccttgcatatttattgtagagagagaa 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 45730 - 45602
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| ||||||||||| |||||||||||| ||     
T  45730 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgtctctttcaaatttcaatgcaatattaattattgtatta 45631  T
Q  371 tcaataatacccttgcatatttattgtag 399  Q
    ||||||||| ||||  |||||||||||||    
T  45630 tcaataataaccttaaatatttattgtag 45602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 287 - 403
Alignment:
Q  291 acttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatat 390  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||| | || |||||    
T  287 acttgtccattttagagaataattttgtttcacaatacttgtcacttttaaattttaatgcaacattaattattgtcttgtcaataatatcattacatat 386  T
Q  391 ttattgtagggagagaa 407  Q
    ||||||||| |||||||    
T  387 ttattgtagagagagaa 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 7945 - 7809
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttg 370  Q
    |||||| || |||||| ||||||||||  ||||| |||||||||||  |||||| ||||||||| |||||||||| ||||||||||||||||| |  |||    
T  7945 tactccatctgtttcacaatacttgtcgtttttaaagaataattttaattcacattacttgtcactttcaagttttaatgcaacattaattatcggtttg 7846  T
Q  371 tcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||| ||| | |||||||||||  |||||||    
T  7845 tcaataatactcttacctatttattgtaaagagagaa 7809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 281 - 404
Target Start/End: Original strand, 6911 - 7033
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    |||||| ||||||||||  |||| |||||||||||||||||| | || |||||  ||| |||||||||||||||||||||||||| | ||||||||||||    
T  6911 gtttcacaatacttgtcgtttttggagaataattttgtttcatattatttgtccgttt-aagtttcaatgcaacattaattattgacgtgtcaataatac 7009  T
Q  381 ccttgcatatttattgtagggaga 404  Q
     ||| | |||||||||||| ||||    
T  7010 tcttacttatttattgtagagaga 7033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 399
Target Start/End: Complemental strand, 71350 - 71232
Alignment:
Q  281 gtttcataatacttgtccattttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatac 380  Q
    |||||| ||||||||||  ||||  ||||||||||| ||||||| ||||||||| ||| |||||| ||||||| |||||||||||  |||| ||| ||||    
T  71350 gtttcacaatacttgtcgtttttgaagaataattttatttcacattacttgtcacttttaagtttgaatgcaaaattaattattggtttgttaattatac 71251  T
Q  381 ccttgcatatttattgtag 399  Q
    |||| | ||||||||||||    
T  71250 ccttacctatttattgtag 71232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 65199 - 65278
Alignment:
Q  305 gagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 384  Q
    |||||||||||||||||| | ||||||||| ||| || ||||||||||| |||||||||||  |||||||||||||||||    
T  65199 gagaataattttgtttcatattacttgtcacttttaaatttcaatgcaatattaattattggtttgtcaataataccctt 65278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 1184 - 1110
Alignment:
Q  305 gagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataata 379  Q
    |||||||||||||||| |   ||||||||||||| ||||||| ||||||||||||||||||  || |||||||||    
T  1184 gagaataattttgttttattttacttgtcatttttaagtttcgatgcaacattaattattggtttatcaataata 1110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 404
Target Start/End: Original strand, 15351 - 15456
Alignment:
Q  299 attttagagaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgta 398  Q
    ||||||| ||| ||| |||||||||  ||| ||| | ||| |||||||||||||||||||||||| |  ||||||||||||| ||| | | |||||||||    
T  15351 attttagtgaacaatattgtttcactttacatgtaacttttaagtttcaatgcaacattaattatcggtttgtcaataatacgcttacttttttattgta 15450  T
Q  399 gggaga 404  Q
    | ||||    
T  15451 gagaga 15456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 1 - 35
Alignment:
Q  373 aataatacccttgcatatttattgtagggagagaa 407  Q
    ||||||||||||||||||||||||||| |||||||    
T  1 aataatacccttgcatatttattgtagagagagaa 35  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 23913 - 23851
Alignment:
Q  271 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtc 333  Q
    |||||| ||||||||| ||||| ||||||||||||||||   |||||||||| ||||| ||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 23851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 234332 - 234399
Alignment:
Q  326 tacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttatt 395  Q
    ||||||||||||||||  ||  ||||||||||||||| ||| ||||||||||||| |||  |||||||||    
T  234332 tacttgtcattttcaaagtt--atgcaacattaattactgttttgtcaataatactcttaaatatttatt 234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 252633 - 252710
Alignment:
Q  330 tgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    ||||| ||||||  |||||| ||||||||| |||||| |||||  || ||||||||  |||||||||||| |||||||    
T  252633 tgtcactttcaaagttcaatacaacattaaatattgttttgtctttattacccttgattatttattgtagagagagaa 252710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 14451 - 14375
Alignment:
Q  331 gtcattttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagggagagaa 407  Q
    |||||||||||  |||||| ||||||||| | |||| |||||  || ||||||||  |||||||||||| |||||||    
T  14451 gtcattttcaaagttcaatacaacattaaatgttgttttgtctttattacccttgattatttattgtagagagagaa 14375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University