View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_high_6 (Length: 405)
Name: NF18368_high_6
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 54474010 - 54474399
Alignment:
| Q |
5 |
cagaaaattctgggtgagttaaacttggtctacttctaatgctaattgattcatgtcgttgttacttgttaatgaagacacgccacaaatttcaatccat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54474010 |
cagaaaattctgggtgagttaaacttggtctacttctaatgctaattgattcatgtcgttgttacttgttaatgaagacacgccacaaatttcaatccat |
54474109 |
T |
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| Q |
105 |
gctttattcataaaggagagaataaagtcttctcattctcataatataaattacgtaaaggtcacaaaatgaatagatttgacccttctcgttttcattc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54474110 |
gctttattcataaaggagagaataaagtcttctcattctcataatataaattacgtaaaggtcacaaaatgaatagatttgacccttctcgttttcattc |
54474209 |
T |
|
| Q |
205 |
tcaaactaaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54474210 |
tcaaactaaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacat |
54474309 |
T |
|
| Q |
305 |
tggttgtccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgccattaaattttgatg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54474310 |
tggttgtccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgccattaaattttgatg |
54474399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 211 - 362
Target Start/End: Original strand, 31266267 - 31266418
Alignment:
| Q |
211 |
taaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttg |
310 |
Q |
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|||||||||||||||||||| || | | ||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||| |
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| T |
31266267 |
taaaatcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattg |
31266366 |
T |
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| Q |
311 |
tccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatc |
362 |
Q |
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| T |
31266367 |
tctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatc |
31266418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 379
Target Start/End: Complemental strand, 1141352 - 1141185
Alignment:
| Q |
212 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
311 |
Q |
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|||||||||||||||||||||| | | |||||| |||||| | ||||||||| | || || ||||||||||||||||||||| |||||||||||||| |
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| T |
1141352 |
aaaatcaattgaattgcattaactttggtgcaaatgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
1141253 |
T |
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| Q |
312 |
ccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgc |
379 |
Q |
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| T |
1141252 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgc |
1141185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 379
Target Start/End: Complemental strand, 1137891 - 1137724
Alignment:
| Q |
212 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
311 |
Q |
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|||||||||||||||||||||| | | |||||| ||||||| | ||||||||| | || | ||||||||||||||||||||| |||||||||||||| |
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| T |
1137891 |
aaaatcaattgaattgcattaactttggggcaaatgtgagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgt |
1137792 |
T |
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| Q |
312 |
ccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgc |
379 |
Q |
| |
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||||||||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
1137791 |
ttttccattgtactcacaagtgcttccaaatcttaatctctccaaaaaatcaatagtcacatctttgc |
1137724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 1147709 - 1147657
Alignment:
| Q |
88 |
cacaaatttcaatccatgctttattcataaaggagagaataaagtcttctcat |
140 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
1147709 |
cacaaatttcaatccatgttttattgataaaggagagaataaagacttctcat |
1147657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 48323125 - 48323288
Alignment:
| Q |
211 |
taaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttg |
310 |
Q |
| |
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||||||||||||||||||||||| | | |||| |||| | ||| |||||||||||| |||| |||| ||||||||||||||||| |||| ||| || |
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| T |
48323125 |
taaaatcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatg |
48323221 |
T |
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| Q |
311 |
tccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatcttt |
377 |
Q |
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|||||||||||| ||||||| |||| |||||||| |||||||||||||| || ||||||||||||| |
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| T |
48323222 |
tccttccattgtgctcacaagtgcttccaaacctcaacctctccaaaaattcagtagtcacatcttt |
48323288 |
T |
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