View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_high_7 (Length: 349)
Name: NF18368_high_7
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 27977805 - 27978136
Alignment:
| Q |
1 |
ttctcatgaatataataaccagcttacttttatgannnnnnncatgtcttacacaattagtac-attgatttgcttccaaaacacacttcttcaactcca |
99 |
Q |
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| T |
27977805 |
ttctcatgaatataataaccagcttacttttatgatttttttcatgtcttacacaattaataccattgatttgcttccaaaacacacttctttaactcca |
27977904 |
T |
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| Q |
100 |
aatatactccattagcaacaaattgaaatggaccacaatcgcnnnnnnnggtttatatattctatttaccattccaaatacataagtcaaattaattatt |
199 |
Q |
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| T |
27977905 |
a-tatactccattagcaacaaattgaaatggaccacaatcgctttttttggtttatatattgtatttaccattccaaatacataaatcaaattaattatt |
27978003 |
T |
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| Q |
200 |
atcaatatagaaggacctattttgacctactgcaatgtcccaactgctcttcaacattcgattaccagcattatgggagttcaagacgttgttggcaccg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27978004 |
atcaatatagaaggacctattttgacctactgcaatgtcccaactgctcttcaacattcgattaccagcattatgggagttcaagacgttgttggcaccg |
27978103 |
T |
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| Q |
300 |
gtaagtacttgggtctcccattgatgattgaca |
332 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
27978104 |
gtaagtacttaggtctcccattgatgattgaca |
27978136 |
T |
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