View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18368_low_1 (Length: 565)
Name: NF18368_low_1
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_low_1 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 24 - 416
Target Start/End: Complemental strand, 22270649 - 22270253
Alignment:
| Q |
24 |
ggatcctttagcaaatcctccgcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttcacttcaacatctttaatcttgttcaagg |
123 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
22270649 |
ggatcctttagcaattcctcagcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttgacttcagcatcttttatcttgttcaagg |
22270550 |
T |
|
| Q |
124 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270549 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
22270450 |
T |
|
| Q |
224 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270449 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
22270350 |
T |
|
| Q |
324 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaatatacattaaaacaaataatttagtac----taatggtatatatcttctgat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22270349 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaatatacattaaaacaaataatttagtactaattaatggtatatatcttctgat |
22270253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 24 - 416
Target Start/End: Original strand, 22263191 - 22263587
Alignment:
| Q |
24 |
ggatcctttagcaaatcctccgcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttcacttcaacatctttaatcttgttcaagg |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
22263191 |
ggatcctttagcaattcctcagcagaaggtctagcccttgtttgagcaagacacttttcgatgaaagtcttgacttcagcatcttttatcttgttcaagg |
22263290 |
T |
|
| Q |
124 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22263291 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
22263390 |
T |
|
| Q |
224 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22263391 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
22263490 |
T |
|
| Q |
324 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaatatacattaaaacaaataatttagtac----taatggtatatatcttctgat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22263491 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaatatacattaaaacaaataatttagtactaattaatggtatatatcttctgat |
22263587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 24 - 375
Target Start/End: Original strand, 45873620 - 45873971
Alignment:
| Q |
24 |
ggatcctttagcaaatcctccgcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttcacttcaacatctttaatcttgttcaagg |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||| | ||||| ||||||||||||| |
|
|
| T |
45873620 |
ggatcctttagcaattcctcagcagaaggtctgtcccttggttttgcaagacacttttcaatgaaagccttcacttctgcgtcttttatcttgttcaagg |
45873719 |
T |
|
| Q |
124 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
223 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| | ||||||||| |
|
|
| T |
45873720 |
attgtggtctcactcctgatgacaccttcttgtatatctttgcaacattgtcacattcactataaggaatctctcgtgtcaccatctccagtactaacat |
45873819 |
T |
|
| Q |
224 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
323 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||||| || ||||||||||| || ||||| || |||| ||||||||||| || ||| |
|
|
| T |
45873820 |
tccaaatgagtatatgtccaccaattcagtgtaattctcttcatataattcaggtgccataaactctggtgtcccaagaactgaatgtgctgtatgattc |
45873919 |
T |
|
| Q |
324 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaatatacat |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45873920 |
tttccaacaattgctgccaaacctaagtcaccaatcttaacctaatatacat |
45873971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 22265308 - 22265134
Alignment:
| Q |
24 |
ggatcctttagcaaatcctccgcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttcacttcaacatctttaatcttgttcaagg |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
22265308 |
ggatcctttagcaattcctcagcagaaggtctagcccttgattgagcaagacacttttcgatgaaagtcttgacttcagcatcttttatcttgttcaagg |
22265209 |
T |
|
| Q |
124 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22265208 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaa |
22265134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 465 - 565
Target Start/End: Original strand, 22263636 - 22263736
Alignment:
| Q |
465 |
tttacctggccagtatttccattgacaaaaacattactgcagttgaggtctctatgaatgatacaaggatcatgaacatgcaaataattcaacccttcca |
564 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22263636 |
tttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttcca |
22263735 |
T |
|
| Q |
565 |
a |
565 |
Q |
| |
|
| |
|
|
| T |
22263736 |
a |
22263736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 465 - 565
Target Start/End: Complemental strand, 22270204 - 22270104
Alignment:
| Q |
465 |
tttacctggccagtatttccattgacaaaaacattactgcagttgaggtctctatgaatgatacaaggatcatgaacatgcaaataattcaacccttcca |
564 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270204 |
tttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttcca |
22270105 |
T |
|
| Q |
565 |
a |
565 |
Q |
| |
|
| |
|
|
| T |
22270104 |
a |
22270104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 465 - 565
Target Start/End: Original strand, 45874205 - 45874305
Alignment:
| Q |
465 |
tttacctggccagtatttccattgacaaaaacattactgcagttgaggtctctatgaatgatacaaggatcatgaacatgcaaataattcaacccttcca |
564 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45874205 |
tttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaacccttcca |
45874304 |
T |
|
| Q |
565 |
a |
565 |
Q |
| |
|
| |
|
|
| T |
45874305 |
a |
45874305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 10082141 - 10082486
Alignment:
| Q |
24 |
ggatcctttagcaaatcctccgcagaaggtctagcccttggttgagcaagacacttttcgatgaaagtcttcacttcaacatctttaatcttgttcaagg |
123 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||| || ||||||||||| | |
|
|
| T |
10082141 |
ggatcttttagcaattcatcagcagaaggtctagcccttggttgagcaagacacctttcaatgaaagccttcacttcagcatcctttatcttgttcaacg |
10082240 |
T |
|
| Q |
124 |
attgtggtctcacacctgaagtcaccttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacat |
223 |
Q |
| |
|
|||| |||||||| ||||||| |||||| ||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||||||| ||||||||| |
|
|
| T |
10082241 |
attgaggtctcacgcctgaagacacctttttgtatatcttcgcaacattatcacattcgctatacggaatctctcgtgtcaccatctctagtactaacat |
10082340 |
T |
|
| Q |
224 |
tccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttc |
323 |
Q |
| |
|
||| |||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||| |||||| |
|
|
| T |
10082341 |
tccgaatgagtatatgtcaaccatctcagtgtaattctcttcatataactctggtgccataaattccggtgtacctaaaactgaatgtgctgaatggttc |
10082440 |
T |
|
| Q |
324 |
tttcccacaattgctgccaaacctaagtcaccaatcttaacctaat |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10082441 |
tttcccacaattattgccaaacctaagtcaccgatcttaacctaat |
10082486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 466 - 561
Target Start/End: Original strand, 10082839 - 10082934
Alignment:
| Q |
466 |
ttacctggccagtatttccattgacaaaaacattactgcagttgaggtctctatgaatgatacaaggatcatgaacatgcaaataattcaaccctt |
561 |
Q |
| |
|
||||||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10082839 |
ttacctgaccggtgtttccgttgacaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctt |
10082934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 150 - 366
Target Start/End: Original strand, 41244729 - 41244945
Alignment:
| Q |
150 |
ttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacattccaaatgagtatatgtctaccattt |
249 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| |||||||| | ||||||||| |||||||| |||| ||||||||||||||||| |||| || |
|
|
| T |
41244729 |
ttcttgtatattttggcaacattgtcacactcactataaggaatttccaatgtcaccatttctaatacacacataccaaatgagtatatgtccaccaatt |
41244828 |
T |
|
| Q |
250 |
ctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctgagtggttctttcccacaattgctgccaaacctaa |
349 |
Q |
| |
|
||||||| | || || |||| ||||| |||||||| || |||||||| ||||||| ||||| || ||||| |||||||||||||| ||||| || |
|
|
| T |
41244829 |
ctgtgtagtcttcgtcgtataattctggagccataaactctggtgtgccgagaattgtgtgtgcaatatgattcttccccacaattgctgctaaacccaa |
41244928 |
T |
|
| Q |
350 |
gtcaccaatcttaacct |
366 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41244929 |
gtcaccaatcttaacct |
41244945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 42726887 - 42726719
Alignment:
| Q |
147 |
accttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacattccaaatgagtatatgtctacca |
246 |
Q |
| |
|
||||| ||||||||||| || ||| ||||||||||||||||||| || || | ||| ||||| || | | ||||||||||||||||||||||||||| |
|
|
| T |
42726887 |
acctttttgtatatcttggctacactgtcacattcactatatggtatctccattgtaaccatttcaagcaaacacattccaaatgagtatatgtctacca |
42726788 |
T |
|
| Q |
247 |
tttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctg |
315 |
Q |
| |
|
|||| ||||||| || ||||| ||||| |||||||| | || || || |||| |||||||||||||| |
|
|
| T |
42726787 |
tttcagtgtaatcttcctcatacagctcaggtgccatgtactcaggagtccctaaaattgaatgtgctg |
42726719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 466 - 561
Target Start/End: Original strand, 41245604 - 41245699
Alignment:
| Q |
466 |
ttacctggccagtatttccattgacaaaaacattactgcagttgaggtctctatgaatgatacaaggatcatgaacatgcaaataattcaaccctt |
561 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
41245604 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctt |
41245699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 41244624 - 41244656
Alignment:
| Q |
45 |
gcagaaggtctagcccttggttgagcaagacac |
77 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
41244624 |
gcagaaggtctagcccttggctgagcaagacac |
41244656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 20861 - 20693
Alignment:
| Q |
147 |
accttcttgtatatctttgcaacattgtcacattcactatatggaatttcaagtgtcaccatctctaatactaacattccaaatgagtatatgtctacca |
246 |
Q |
| |
|
||||| ||||||||||| || ||| ||||||||||||||||||| || || | ||| ||||| || | | ||||||||||||||||||||||||||| |
|
|
| T |
20861 |
acctttttgtatatcttggctacactgtcacattcactatatggtatctccattgtaaccatttcaagcaaacacattccaaatgagtatatgtctacca |
20762 |
T |
|
| Q |
247 |
tttctgtgtaattctcttcatatagctctggtgccataaattccggtgtgcctagaattgaatgtgctg |
315 |
Q |
| |
|
|||| ||||||| || ||||| ||||| |||||||| | || || || |||| |||||||||||||| |
|
|
| T |
20761 |
tttcagtgtaatcttcctcatacagctcaggtgccatgtactcaggagtccctaaaattgaatgtgctg |
20693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 47005475 - 47005550
Alignment:
| Q |
220 |
acattccaaatgagtatatgtctaccatttctgtgtaattctcttcatatagctctggtgccataaattccggtgt |
295 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||| |||||| ||||||||| | |||||||||||||| || ||||| |
|
|
| T |
47005475 |
acattccaaaagagtatatgtcaaccaattcattgtaatcctcttcatacacttctggtgccataaactcaggtgt |
47005550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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