View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18368_low_10 (Length: 306)

Name: NF18368_low_10
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18368_low_10
NF18368_low_10
[»] chr4 (3 HSPs)
chr4 (17-288)||(25109556-25109825)
chr4 (228-283)||(24306401-24306456)
chr4 (17-129)||(3938203-3938315)
[»] chr5 (3 HSPs)
chr5 (17-129)||(39045197-39045309)
chr5 (21-129)||(7280100-7280208)
chr5 (18-69)||(41701214-41701265)
[»] chr1 (2 HSPs)
chr1 (135-275)||(45516559-45516699)
chr1 (135-275)||(44093782-44093922)
[»] chr2 (3 HSPs)
chr2 (135-275)||(35296964-35297104)
chr2 (135-275)||(14688491-14688631)
chr2 (132-283)||(44024042-44024193)
[»] chr8 (3 HSPs)
chr8 (137-275)||(29259107-29259245)
chr8 (135-256)||(13821265-13821386)
chr8 (17-69)||(28574308-28574360)
[»] scaffold0015 (1 HSPs)
scaffold0015 (135-275)||(13900-14040)
[»] chr3 (3 HSPs)
chr3 (135-275)||(49147846-49147986)
chr3 (17-129)||(3423248-3423360)
chr3 (17-129)||(22163917-22164029)
[»] chr6 (5 HSPs)
chr6 (190-284)||(28493627-28493721)
chr6 (190-284)||(29806036-29806130)
chr6 (135-275)||(16498366-16498506)
chr6 (135-281)||(31932142-31932288)
chr6 (20-122)||(35164299-35164401)
[»] chr7 (2 HSPs)
chr7 (135-205)||(16768109-16768179)
chr7 (17-129)||(33631417-33631529)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 25109825 - 25109556
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  25109825 caaaatagactgtcagttgctagtattgatgctcatattcatccatctcgcagaacctgtccacacagcatcagcaaattcagaagtaaaaaataaatga 25109726  T
Q  117 gaatgactttcatagcactatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaacctta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  25109725 gaatgactttcatagcactatcaaggtttaaagttggcgattagcttcaattgtgtggaaattgcttgctacacagattcccttcttgctgtcaacctta 25109626  T
Q  217 tcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctc 288  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  25109625 tcaaagaagattt-aatcagtttcatgtctatactgttcttatccaaaatatcaaaga-cacatgagttctc 25109556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 24306456 - 24306401
Alignment:
Q  228 ttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgag 283  Q
    |||||||| |||||||| ||| |||| ||||| |||||||||||||||| ||||||    
T  24306456 ttaaatcactttcatgtttatgttgtgcttatacaaaatatcaaagacctcatgag 24306401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 3938203 - 3938315
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |||    
T  3938203 caaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggtga 3938302  T
Q  117 gaatgactttcat 129  Q
    |||||| ||||||    
T  3938303 gaatgagtttcat 3938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 39045197 - 39045309
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  39045197 caaaatagactctcagctgctagtattgatgctcatattcatccatctcatagaacctgtccacacagcatcaacaaattcacaagtaaaaaataaatga 39045296  T
Q  117 gaatgactttcat 129  Q
    |||||||||||||    
T  39045297 gaatgactttcat 39045309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 7280208 - 7280100
Alignment:
Q  21 atagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatgagaat 120  Q
    ||||| || ||||||||||||||||  |||||||||||||||||||||| | || |||||||| ||||| || ||||| ||| |||||| |  |||||||    
T  7280208 atagattgccagttgctagtattgacactcatatttatccatctcatagcacctttccacacaacatcagcatattcacaagaaaaaaacaggtgagaat 7280109  T
Q  121 gactttcat 129  Q
    || ||||||    
T  7280108 gagtttcat 7280100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 41701214 - 41701265
Alignment:
Q  18 aaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 69  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||||    
T  41701214 aaaatagattgtcagttgctagtattgatgctcaagttcatccatctcatag 41701265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 45516699 - 45516559
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||| |||||| | |||||||| ||||||||||    
T  45516699 tatcaagggttaaggttggcgatcagcttcaattgtgaggaattggcgtgctattcagattcccttcttgcagtcaacttcatcaaagatgatttaaatc 45516600  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | |||||||| |||  |||||| || ||||| |||||||||    
T  45516599 attttcatgtttattatgttctcatacaaaacatcaaagac 45516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 44093782 - 44093922
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||| | ||||| |||||| |||||||||| |||||  |||| || |||||||| |||||||| |||||||| ||||||||||    
T  44093782 tatcaagggttaaggttggcggtcagcttaaattgttaggaattggcgtgctattcagactcacttcttgcagtcaacctcatcaaagatgatttaaatc 44093881  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | |||||||| ||| ||||||| || ||||| |||||||||    
T  44093882 attttcatgtttatgttgttctcattcaaaacatcaaagac 44093922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 35296964 - 35297104
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| ||||| || ||||||||||    
T  35296964 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctgatcaatgatgatttaaatc 35297063  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | ||||||||||||  |||||| || |||||||||||||||    
T  35297064 attttcatgtctatgctgttctcattcaaaatatcaaagac 35297104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 14688491 - 14688631
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||| | |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| |||||||||||  ||||||| |||||||| ||||||||||    
T  14688491 tatcaaaggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatcaacctcatcaaagatgatttaaatc 14688590  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | |||||||| ||| ||||||| || ||||| |||||||||    
T  14688591 attttcatgtttatgttgttctcattcaaaacatcaaagac 14688631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 44024042 - 44024193
Alignment:
Q  132 cactatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaa 231  Q
    |||||||||||| |||||||||| || || ||||||  ||  ||  || |||||||| | |||||| ||||  |||||||||| || |  || ||  |||    
T  44024042 cactatcaaggtctaaagttggctatgagtttcaatcttggcgaggtgacttgctactcggattccattctcactgtcaacctcattacggaggagctaa 44024141  T
Q  232 atcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgag 283  Q
    |||| |||||||| ||| |||| ||||| |||||||||||||||| ||||||    
T  44024142 atcactttcatgtttatgttgtgcttatacaaaatatcaaagacctcatgag 44024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 29259107 - 29259245
Alignment:
Q  137 tcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcag 236  Q
    |||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| |||||||| |||||||||||     
T  29259107 tcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatcat 29259206  T
Q  237 tttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    |||||||| |||  |||||| || |||||||||||||||    
T  29259207 tttcatgtttatgctgttctcattcaaaatatcaaagac 29259245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 13821265 - 13821386
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||| | |||| ||||||||| | ||| ||||||||||||||| | |||||  |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  13821265 tatcaatggttaaggttggcgatcaacttaaattgtgaggaattgacgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 13821364  T
Q  235 agtttcatgtctatattgttct 256  Q
    | |||||||| ||| |||||||    
T  13821365 attttcatgtttatgttgttct 13821386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 28574308 - 28574360
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 69  Q
    ||||||||| || || |||||||||||||  |||||||| |||||||||||||    
T  28574308 caaaatagattgccaattgctagtattgacactcatattcatccatctcatag 28574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 13900 - 14040
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| |||||||| |||||||||     
T  13900 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatt 13999  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | |||||||| |||  |||||| || |||||||||||||||    
T  14000 attttcatgtttatgctgttctcattcaaaatatcaaagac 14040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 49147986 - 49147846
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||||| ||||| |||||||||| |||||| |||||  |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  49147986 tatcaagggttaaggttggcgatcagcttaaattgtgaggtattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 49147887  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | || ||||| ||| ||||||| || ||||| || ||||||    
T  49147886 atttccatgtttatgttgttctcattcaaaacattaaagac 49147846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 3423248 - 3423360
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| |||||||||||| | ||| ||| |||||| |  |||    
T  3423248 caaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcaacataatcacaagaaaaaaagaggtga 3423347  T
Q  117 gaatgactttcat 129  Q
    |||||| ||||||    
T  3423348 gaatgagtttcat 3423360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 22164029 - 22163917
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |||    
T  22164029 caaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggtga 22163930  T
Q  117 gaatgactttcat 129  Q
    |||||| ||||||    
T  22163929 gaatgagtttcat 22163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 28493627 - 28493721
Alignment:
Q  190 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagt 284  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  ||||||||||||||| |||||||||  |||||||    
T  28493627 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctattctgttcttatccaaaacatcaaagacatcatgagt 28493721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 29806036 - 29806130
Alignment:
Q  190 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagt 284  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  ||||||||||||||| |||||||||  |||||||    
T  29806036 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctattctgttcttatccaaaacatcaaagacatcatgagt 29806130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 16498506 - 16498366
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||||| |||| ||||||| ||| ||| ||||||||||||||||| |||||  |||| |||||||||||  | ||||| |||||||| ||||||||||    
T  16498506 tatcaagggttaaggttggcggttaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatgaacctcatcaaagatgatttaaatc 16498407  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagac 275  Q
    | ||||||||  ||  | |||| || |||||||||||||||    
T  16498406 attttcatgttcatgctattctcattcaaaatatcaaagac 16498366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 31932288 - 31932142
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 234  Q
    |||||| || ||||| |||| ||||| ||||||| ||| ||||||| ||||||  | |||||||||||  ||||||| || ||||| || ||||| ||||    
T  31932288 tatcaaagtctaaagctggctattagtttcaattttgacgaattggtttgctattcggattcccttctcactgtcaaactcatcaaggaggatttgaatc 31932189  T
Q  235 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatg 281  Q
    | |||||||| ||| |||| ||||| |||||||||||||||| ||||    
T  31932188 actttcatgtttatgttgtgcttattcaaaatatcaaagacctcatg 31932142  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 35164299 - 35164401
Alignment:
Q  20 aatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatgagaa 119  Q
    ||||||||| || |||||| |||||| ||| ||||| |||||  | |||| | ||||||||||| |||||||| ||||| |||||||||||| |||||||    
T  35164299 aatagactgccaattgctaatattgacgcttatattcatccaatttatagcacctgtccacacaacatcaacatattcacaagtaaaaaatagatgagaa 35164398  T
Q  120 tga 122  Q
    |||    
T  35164399 tga 35164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 16768179 - 16768109
Alignment:
Q  135 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgc 205  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| |||||||||||    
T  16768179 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgc 16768109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 33631417 - 33631529
Alignment:
Q  17 caaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatga 116  Q
    ||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |||    
T  33631417 caaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggtga 33631516  T
Q  117 gaatgactttcat 129  Q
    |||||| ||||||    
T  33631517 gaatgagtttcat 33631529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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