View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18368_low_13 (Length: 265)
Name: NF18368_low_13
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 4637280 - 4637487
Alignment:
| Q |
42 |
ggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttagg |
141 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4637280 |
ggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttagg |
4637379 |
T |
|
| Q |
142 |
aatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtgaagggttgaag |
241 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4637380 |
aatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagcaaagggttgaag |
4637479 |
T |
|
| Q |
242 |
tttttaag |
249 |
Q |
| |
|
|||||||| |
|
|
| T |
4637480 |
tttttaag |
4637487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 42 - 249
Target Start/End: Complemental strand, 4696862 - 4696655
Alignment:
| Q |
42 |
ggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttagg |
141 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || |||||||| || |||||||| |||||||||||||||||||| ||||||||| || | || |
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| T |
4696862 |
ggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctggg |
4696763 |
T |
|
| Q |
142 |
aatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtgaagggttgaag |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |
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| T |
4696762 |
aatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgattttttcgtcatcatgatagaaccaaagagaagggttgaag |
4696663 |
T |
|
| Q |
242 |
tttttaag |
249 |
Q |
| |
|
|||||||| |
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|
| T |
4696662 |
tttttaag |
4696655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 4783547 - 4783300
Alignment:
| Q |
2 |
tccgtgttgtcaaaaccaggtaaattgatatgataatcttggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
4783547 |
tccgtgttgtcaaaaccaggtaaattgataagataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaa |
4783448 |
T |
|
| Q |
102 |
taaaagcataataaggatttgattggtttatgctgttaggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgat |
201 |
Q |
| |
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| ||||||||| |||| | |||||||| || |||| |||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||| ||| |
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| T |
4783447 |
tgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttgacgat |
4783348 |
T |
|
| Q |
202 |
tttttcgtcatcaaaatagagccaaagtgaagggttgaagtttttaag |
249 |
Q |
| |
|
| | |||||| || ||||||||||||||||||||||||||||| |
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|
| T |
4783347 |
atgattctcatcatgatgaagccaaagtgaagggttgaagtttttaag |
4783300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4815977 - 4815729
Alignment:
| Q |
1 |
ttccgtgttgtcaaaaccaggtaaattgatatgataatcttggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgtta |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
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|
| T |
4815977 |
ttccgtgttgtcagaaccaggtaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgtta |
4815878 |
T |
|
| Q |
101 |
ataaaagcataataaggatttgattggtttatgctgttaggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtga |
200 |
Q |
| |
|
|| ||||||||| |||| | |||||||| || |||| |||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||| || |
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| T |
4815877 |
atgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttgacga |
4815778 |
T |
|
| Q |
201 |
ttttttcgtcatcaaaatagagccaaagtgaagggttgaagtttttaag |
249 |
Q |
| |
|
| | | |||||| || ||||||||||||||||||||||||||||| |
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|
| T |
4815777 |
tatgattctcatcatgatgaagccaaagtgaagggttgaagtttttaag |
4815729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 4711730 - 4711579
Alignment:
| Q |
56 |
gtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatgaaagatatgt |
155 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||| || |||||| |||| |||||||||| |||| |
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|
| T |
4711730 |
gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgc |
4711631 |
T |
|
| Q |
156 |
ttaacttctcatttggtttggtttggatgcaatattctttggtgattttttc |
207 |
Q |
| |
|
||| |||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
4711630 |
ttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttc |
4711579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 4653925 - 4654126
Alignment:
| Q |
48 |
tgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatgaa |
147 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||| |||||| || |||| |||||||| |
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|
| T |
4653925 |
tgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaa |
4654024 |
T |
|
| Q |
148 |
agatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtgaagggttgaagttttta |
247 |
Q |
| |
|
|| |||||||| ||||| ||| |||| | ||||||||||||||||||||||||| |||| ||||| || | |||||||||||| |||||||||||| |
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|
| T |
4654025 |
agttatgtttagcttcttattcggttggacttggatgcaatattctttggtgattgtttccccatcatcatgaatccaaagtgaaggattgaagttttta |
4654124 |
T |
|
| Q |
248 |
ag |
249 |
Q |
| |
|
|| |
|
|
| T |
4654125 |
ag |
4654126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 4864345 - 4864555
Alignment:
| Q |
42 |
ggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgtt--- |
138 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||||| ||||| | || |
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|
| T |
4864345 |
ggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggc |
4864444 |
T |
|
| Q |
139 |
aggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtgaagggttg |
238 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| |||| || | |||||||||||||||| |
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|
| T |
4864445 |
cggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgattttttccccatcttcatgaatccaaagtgaagggttg |
4864544 |
T |
|
| Q |
239 |
aagtttttaag |
249 |
Q |
| |
|
||||||||||| |
|
|
| T |
4864545 |
aagtttttaag |
4864555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 4845675 - 4845477
Alignment:
| Q |
51 |
ggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatgaaaga |
150 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||||||||| ||||||| ||| ||||||| |||| |||| ||||| |
|
|
| T |
4845675 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagt |
4845576 |
T |
|
| Q |
151 |
tatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtgaagggttgaagtttttaag |
249 |
Q |
| |
|
|||||||| |||| ||||||||||| | || ||||||||||||||||| |||||||| | || || ||||||||||||||| ||||||||||||| |
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|
| T |
4845575 |
tatgtttagcttcccatttggtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaag |
4845477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 4673115 - 4673333
Alignment:
| Q |
31 |
atgataatcttggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggttt |
130 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||| |||||||| | | |||||||| ||| |
|
|
| T |
4673115 |
atgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttc |
4673214 |
T |
|
| Q |
131 |
atgctgttaggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagtg |
230 |
Q |
| |
|
||| || | ||||||||| |||||||| ||||||||| || ||| ||||||| ||| |||||||||||||| |||| |||| | || | |||||| |
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|
| T |
4673215 |
atgatgcttggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgtttcctcataatcatgaatccaaagga |
4673314 |
T |
|
| Q |
231 |
aagggttgaagtttttaag |
249 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4673315 |
aagggttgaagtttttaag |
4673333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 4644114 - 4644321
Alignment:
| Q |
26 |
ttgatatgataatcttggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgatt |
125 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||||| |
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|
| T |
4644114 |
ttgatacgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaacatttgat- |
4644212 |
T |
|
| Q |
126 |
ggtttatgctgttaggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgattttttcgtcatcaaaatagagcca |
225 |
Q |
| |
|
| |||||||||| |||||||| ||||||||||| ||| ||||||||||||| |||||| |||| || | |||||| || ||||| |
|
|
| T |
4644213 |
-----------gtgggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgatattattctcatcatgatgaagcca |
4644301 |
T |
|
| Q |
226 |
aagtgaagggttgaagtttt |
245 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4644302 |
aagtgaagggttgaagtttt |
4644321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 4667353 - 4667521
Alignment:
| Q |
31 |
atgataatcttggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggttt |
130 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||||| |||||||| |||| || || ||||| || ||||| | ||| |||| |||||||| |
|
|
| T |
4667353 |
atgataatttgggtcactgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagc---aaaagcatttaattggttt |
4667449 |
T |
|
| Q |
131 |
atgctgttaggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgatt |
202 |
Q |
| |
|
|| | || |||||||||| || || || ||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
4667450 |
gtgtttttgggaatgaaagttacgtctagtttctccccttgtttggtatggatgcaatattctttggtgatt |
4667521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 4631451 - 4631513
Alignment:
| Q |
140 |
ggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatattctttggtgatt |
202 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt |
4631513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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