View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_low_19 (Length: 218)
Name: NF18368_low_19
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5752832 - 5752651
Alignment:
| Q |
20 |
ccaagtaattgagtagtacaaaatggtatatataaacttcaccgaattgcagctatgtaagctcaactcagcatacagtcttgattaaaaaacattacat |
119 |
Q |
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| T |
5752832 |
ccaagtaattaagtagtacagaatggtataaataaacttcaccgcattgcagctatgtaagctcaactcagtatacagtcttgagtaaaaaacattacat |
5752733 |
T |
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| Q |
120 |
ttattaggaatcttgaagagttcaaatacagtaatctaaatcctcaacttcttggcaagtttgaaccatttagtatggtacg |
201 |
Q |
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| T |
5752732 |
ttattaggaatcttgaagagttcaaacacagtaatctaaatcctcgactgcttggcaagcttgaaccattcagtatggtacg |
5752651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 5756725 - 5756567
Alignment:
| Q |
41 |
aatggtatatataaacttcaccgaattgcagctatgtaagctcaactcagcatacagtcttgattaaaaaacattacatttattaggaatcttgaagagt |
140 |
Q |
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| T |
5756725 |
aatggtatatataaacttcaccgcattgcagctatgtaagctcaactcagcatacagtcttgagtaaaaaacattacatttattaggaatcttgaagagt |
5756626 |
T |
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| Q |
141 |
tcaaatacagtaatctaaatcctcaacttcttggcaagtttgaaccatttagtatggta |
199 |
Q |
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| T |
5756625 |
tcaactacagaaatctaaatcctcgactgctttaaaagcttgaaccattcagtatggta |
5756567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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