View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18368_low_4 (Length: 440)
Name: NF18368_low_4
Description: NF18368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18368_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Original strand, 35409851 - 35410268
Alignment:
| Q |
4 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
103 |
Q |
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| T |
35409851 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
35409950 |
T |
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| Q |
104 |
aaacggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtccatatgaggagtccatcagccgcataaggataatc |
203 |
Q |
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| T |
35409951 |
aaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatc |
35410050 |
T |
|
| Q |
204 |
ttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcac |
303 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35410051 |
ttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctg-aaaaaaagaaagaataaatagttagatcttatcttcttcac |
35410149 |
T |
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| Q |
304 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactattttctttaccttcttttaagatcggca |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35410150 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
35410249 |
T |
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| Q |
404 |
ggaagaccttccatgtcaa |
422 |
Q |
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| T |
35410250 |
ggaagaccttccatgtcaa |
35410268 |
T |
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