View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_high_15 (Length: 277)
Name: NF18369_high_15
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35429920 - 35430165
Alignment:
| Q |
1 |
actgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattnnnnnnnnntt--cgcgtattaaaataa---gt |
95 |
Q |
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| T |
35429920 |
actgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattaaaaaaaaaatatcgcgtattaaaataattagt |
35430019 |
T |
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| Q |
96 |
tataaagttcttattcttgttannnnnnnaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaattag |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35430020 |
tataaagttcttattcttgttatttttttaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaattag |
35430119 |
T |
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| Q |
196 |
agagtagcttacatgcttgattactcaatataggttaaacaaacac |
241 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35430120 |
agagtatcttacatgcttgattactcaatataggttaaacaaacac |
35430165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35420781 - 35420845
Alignment:
| Q |
1 |
actgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttga |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35420781 |
actgattctagttattctttggctcttttttgtttgtatgtttctgcaatcgcacttcttgttga |
35420845 |
T |
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