View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_high_2 (Length: 818)
Name: NF18369_high_2
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 9 - 796
Target Start/End: Complemental strand, 3765121 - 3764349
Alignment:
| Q |
9 |
acatcatcatctatgtaccagtgttgtcaatcgttgattgcagaaaatagaagtttattcaattttcgctaccctatagtgctgctataacagtgttgtc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3765121 |
acatcatcatctatgtaccagtgttgtcaatcgttgattgcagaaaatagaagtttattcaattttcgctaccctatagtgctgctataacagtgttttc |
3765022 |
T |
|
| Q |
109 |
gataaaggatggtggaccgtgacagagagccaaaaatatgacataccggccaacatatggcaccgtggtgccgccatccttcacaaacttgaccatggag |
208 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3765021 |
gatagaggatggtggaccgtgacagag--ccaaaaatatgacataccggccaacatatggcaccgtggtgccgccatccttcacaaacttgaccatggag |
3764924 |
T |
|
| Q |
209 |
aaaagcaaaaaa-cgcactaccaatatcagtcatggctgatatctggcttacactgtgctataaccactatttttgctacgctatagtactatagcgtat |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3764923 |
aaaagcaaaaaaacgcactaccaatatcagtcatggctgatatctggcttacactgtgctataaccactattttttctacgctatagtactatagcgtat |
3764824 |
T |
|
| Q |
308 |
cgctgaacaataacagtttgttcaaattctgctatgccataacctctatttgacaacattggtatgtacagctaaatggtctaaattgacaccagtctaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3764823 |
cgctgaacaataacagtttgttcaaattctgctatgccataacctctatttgacaacattgctatgtacaactaaatggtctaaattgacaccagtctaa |
3764724 |
T |
|
| Q |
408 |
aactctcattctttcacttcacatactcactgaattgaaaccaatggaaactaccattcatctcttatggtctacactctataacaattacaatgactta |
507 |
Q |
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| T |
3764723 |
aaatctcattctttcagttcacacactcactgaattgaaaccaatggaaactaccattcatctcttatggtctacactctataacaattacaatgactta |
3764624 |
T |
|
| Q |
508 |
aactacctccatctaaatatgagctttagttaaatccgaatcgatctaagcacctgagtttgatccttgttccgaaatcatctttggtcaaactttactt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3764623 |
aactacctccatctaaatatgagctttagttaaatccgaatcgatctaagcacccaagtttgatccttattccgaaatcatctttggtcaaactttactt |
3764524 |
T |
|
| Q |
608 |
aactctaagccaaacctggattactagtgtcatttccttaatagatcaaacacttcggatcgaacacgtgtctcatgtcctcctacatatgtcagtctcc |
707 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3764523 |
aaatctaagccaaacctggattactagtgtcatt--------------aacacttctgatcgaacacgtgtctcgtgtcctcctacatatgtcagtctcc |
3764438 |
T |
|
| Q |
708 |
gacaccgacacaagtgattacatttaagttgttcttttcttaaatcactacatttcatatgtcatttcccttagagggttaagacacaa |
796 |
Q |
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| T |
3764437 |
gacaccgacacaagtgattacatttaagttgttcttttcttaaatcactacatttcatatgtcatttcccttagagggttaagacacaa |
3764349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 25314055 - 25314121
Alignment:
| Q |
299 |
atagcgtatcgctgaacaataacagtttgttcaaattctgctatgccataacctctatttgacaaca |
365 |
Q |
| |
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|||| ||||| | |||||||||| ||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
25314055 |
atagtgtatcacagaacaataacgatttgttcaaattcctctatgctataaccgctatttgacaaca |
25314121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 41894453 - 41894411
Alignment:
| Q |
299 |
atagcgtatcgctgaacaataacagtttgttcaaattctgcta |
341 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
41894453 |
atagcgtattgcagaacaataacaatttgttcaaattctgcta |
41894411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 14643226 - 14643292
Alignment:
| Q |
299 |
atagcgtatcgctgaacaataacagtttgttcaaattctgctatgccataacctctatttgacaaca |
365 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||| |||||| ||| | ||||||||||||| |
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| T |
14643226 |
atagcgtatcgctgaacaatggcaatttgttcaaattcatctatgctatagcaactatttgacaaca |
14643292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 4145278 - 4145323
Alignment:
| Q |
299 |
atagcgtatcgctgaacaataacagtttgttcaaattctgctatgc |
344 |
Q |
| |
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||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
4145278 |
atagcgtatggtggaacaataacaatttgttcaaattctgctatgc |
4145323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 34765234 - 34765157
Alignment:
| Q |
173 |
gtggtgccgccatccttcacaaacttgaccatggagaaaagcaaaaaacgcactaccaatatcagtcatggctgatat |
250 |
Q |
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|||| |||||||||||||||||| ||| |||||| ||||||| |||||| | | || ||||| | |||||||||||| |
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| T |
34765234 |
gtggcgccgccatccttcacaaaattggccatggcgaaaagccaaaaacccgccactgatatctgccatggctgatat |
34765157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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