View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_high_22 (Length: 233)
Name: NF18369_high_22
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 52207153 - 52206954
Alignment:
| Q |
19 |
atgagtgcatgactccaccaccatttgtgttgagatcactcttcccagatctgtattttaaagaattactttaataaggtgttcttcaagtaaacaatcg |
118 |
Q |
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| T |
52207153 |
atgagtccatgactccaccaccatttgtgttgagatcactcttcccagatctgtattttaaagaattactttaataaggtgttcttcaagtaaacaatcg |
52207054 |
T |
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| Q |
119 |
agttttctttttcacctcgtcttcaacacccaccttcgtctcccttcaaacacttctctgttcattatctcaccagccacagtgacacccatattctctg |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52207053 |
agttttctttctcacctcgtcttcaacacccaccttcgcctcccttcaaacacttctctgttcattatctcaccagccacagtgacacccatattctctg |
52206954 |
T |
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