View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18369_high_25 (Length: 201)
Name: NF18369_high_25
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 35420792 - 35420607
Alignment:
| Q |
1 |
actagaatcagtgcctctcaccaaaataatacagacgaagcaaaaagcacgacacagccctgccacaccttacaacaataaacccacaaaaacaaacacc |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420792 |
actagaatcagtggctctcaccacaataatacagacaaagcagaaagcacgacacagacctgccacaccttacaacaataaacccacaaaaacaaacacc |
35420693 |
T |
|
| Q |
101 |
attagagacccaataaacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
186 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420692 |
attagagacccaatacacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
35420607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 35429931 - 35429746
Alignment:
| Q |
1 |
actagaatcagtgcctctcaccaaaataatacagacgaagcaaaaagcacgacacagccctgccacaccttacaacaataaacccacaaaaacaaacacc |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429931 |
actagaatcagtggctctcaccacaataatacagacaaagcagaaagcacgacacagacctgccacaccttacaacaataaacccacaaaaacaaacacc |
35429832 |
T |
|
| Q |
101 |
attagagacccaataaacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
186 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429831 |
attagagacccaatacacctgaaacaatgaacaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctct |
35429746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University