View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18369_high_4 (Length: 602)

Name: NF18369_high_4
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18369_high_4
NF18369_high_4
[»] chr7 (16 HSPs)
chr7 (248-587)||(4803187-4803526)
chr7 (296-582)||(47416121-47416407)
chr7 (9-148)||(14682710-14682852)
chr7 (49-148)||(30474884-30474982)
chr7 (49-146)||(17238358-17238454)
chr7 (43-109)||(8684952-8685018)
chr7 (179-253)||(17236919-17236993)
chr7 (46-114)||(17278636-17278704)
chr7 (46-114)||(30765904-30765972)
chr7 (55-114)||(18298067-18298126)
chr7 (248-294)||(47416837-47416883)
chr7 (49-91)||(14682134-14682176)
chr7 (49-91)||(16956167-16956209)
chr7 (49-109)||(25443240-25443301)
chr7 (60-109)||(17236299-17236350)
chr7 (49-91)||(30474518-30474560)
[»] chr6 (7 HSPs)
chr6 (9-253)||(902366-902612)
chr6 (9-114)||(12261244-12261349)
chr6 (60-109)||(901659-901708)
chr6 (9-114)||(27129043-27129147)
chr6 (46-114)||(16146315-16146383)
chr6 (62-109)||(20746382-20746429)
chr6 (62-98)||(20746437-20746473)
[»] chr4 (14 HSPs)
chr4 (9-253)||(13630290-13630529)
chr4 (49-144)||(44183542-44183636)
chr4 (49-148)||(45044613-45044711)
chr4 (49-146)||(50282652-50282748)
chr4 (179-253)||(44183420-44183494)
chr4 (179-253)||(9091805-9091879)
chr4 (9-146)||(9091624-9091758)
chr4 (179-253)||(50282534-50282608)
chr4 (46-109)||(9087095-9087158)
chr4 (48-91)||(45045065-45045108)
chr4 (55-97)||(26281017-26281059)
chr4 (60-109)||(26280323-26280372)
chr4 (60-105)||(44182798-44182845)
chr4 (60-109)||(50281915-50281966)
[»] chr3 (8 HSPs)
chr3 (49-148)||(54834173-54834272)
chr3 (49-146)||(52255247-52255343)
chr3 (179-253)||(52255129-52255203)
chr3 (9-114)||(34817530-34817634)
chr3 (49-99)||(33389411-33389461)
chr3 (9-114)||(32305024-32305129)
chr3 (9-114)||(42540954-42541059)
chr3 (60-108)||(52254514-52254564)
[»] chr5 (6 HSPs)
chr5 (49-148)||(38385111-38385209)
chr5 (46-114)||(6794535-6794603)
chr5 (46-114)||(23082776-23082844)
chr5 (49-91)||(38385577-38385619)
chr5 (49-109)||(13824397-13824458)
chr5 (49-109)||(24041980-24042041)
[»] chr1 (15 HSPs)
chr1 (49-142)||(24509185-24509277)
chr1 (60-145)||(52751290-52751375)
chr1 (49-148)||(50124321-50124416)
chr1 (179-253)||(24509068-24509142)
chr1 (60-124)||(29021826-29021890)
chr1 (531-587)||(23832655-23832711)
chr1 (49-109)||(52750392-52750452)
chr1 (49-109)||(31697356-31697416)
chr1 (48-114)||(47112331-47112397)
chr1 (198-252)||(52751084-52751137)
chr1 (46-109)||(36142350-36142413)
chr1 (60-109)||(968164-968213)
chr1 (60-109)||(968215-968264)
chr1 (63-114)||(968917-968968)
chr1 (60-119)||(24508445-24508506)
[»] chr2 (8 HSPs)
chr2 (49-109)||(10708372-10708432)
chr2 (49-109)||(12602345-12602406)
chr2 (46-114)||(20685867-20685935)
chr2 (46-114)||(40468848-40468916)
chr2 (54-109)||(3093384-3093438)
chr2 (9-114)||(19298323-19298428)
chr2 (62-114)||(8029762-8029814)
chr2 (9-114)||(28189646-28189751)
[»] scaffold0202 (1 HSPs)
scaffold0202 (46-114)||(21961-22029)
[»] chr8 (2 HSPs)
chr8 (46-114)||(13462342-13462410)
chr8 (43-83)||(9319119-9319159)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 248 - 587
Target Start/End: Original strand, 4803187 - 4803526
Alignment:
Q  248 tcgtaactagaaatgccagttctaataacaaacttaactactggatagtagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagat 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803187 tcgtaactagaaatgccagttctaataacaaacttaactactggatagtagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagat 4803286  T
Q  348 catcactgatatcatagcaaaggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaata 447  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803287 catcactgatatcatagcaaaggactatttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaata 4803386  T
Q  448 atctccttaagaatcccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacat 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803387 atctccttaagaatcccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacat 4803486  T
Q  548 gcaaaaattagtatactagaattacaagaggtcaattact 587  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4803487 gcaaaaattagtatactagaattacaagaggtcaattact 4803526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 296 - 582
Target Start/End: Complemental strand, 47416407 - 47416121
Alignment:
Q  296 tagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagatcatcactgatatcatagcaaaggactgtttccagcttgacactataaa 395  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  47416407 tagctataacctatagccaaatttaaaaatcaacttatttcaatttcaagatcattactgatttcatagcaaaggactgtttccagcttgacacaataaa 47416308  T
Q  396 atgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaatcccaaaatgcaaaccaatcaaataatagttcaaa 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47416307 atgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctgcttaagaatcccaaaatgcaaaccaatcaaataatagttcaaa 47416208  T
Q  496 agtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtatactagaattacaagaggtcaa 582  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47416207 agtgaactgacacgacattcaatcttggcttcttggatatcatcatacacatgcaaaaattagtatactagaattacaagaggtcaa 47416121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 14682852 - 14682710
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcat---tatctttatcaaatctataaacataatcaatttcataactcaatcaacaacca 105  Q
    |||||||||||||||||||||||||         ||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14682852 catcatcaacaacacaccaacccagaaaaaaaattctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaacca 14682753  T
Q  106 atttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||| ||||||||| ||||||| ||||||||||||| ||||||    
T  14682752 atttattcactaaaaaaaatcactttaatttaccaaccaacaa 14682710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 30474982 - 30474884
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  30474982 tcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaa-aaaaacactttaatttaccaaacaacaa 30474884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 17238454 - 17238358
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 146  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  17238454 tcatcatcttcagcaaatctataaacataatcaatttcataactcaatcaacaatcaatttgttca-taaaaaaaatcactttaatttaccaaacaac 17238358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 8684952 - 8685018
Alignment:
Q  43 tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    |||||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8684952 tctttttcatgatcttcatcaaacctataaacataatcaattttataactcaatcaacaaccaattt 8685018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 17236993 - 17236919
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    ||||||| ||||||||||| |||||||||||||| || ||||||||| |||||||||| ||||||||||| ||||    
T  17236993 acaacaactgctatgcttcactaaagatatcaataaactaatacctttaccttataacaactcatccaattgtaa 17236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 17278636 - 17278704
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  17278636 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 17278704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 30765904 - 30765972
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  30765904 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 30765972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 18298126 - 18298067
Alignment:
Q  55 tctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||    
T  18298126 tcttcatcaaatctataaacataaacaatttcatatctcaatcaataaccaattttttca 18298067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 47416883 - 47416837
Alignment:
Q  248 tcgtaactagaaatgccagttctaataacaaacttaactactggata 294  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47416883 tcgtaactagaaatgccagttctaataaccaactcaactactggata 47416837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 14682134 - 14682176
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataac 91  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  14682134 tcattatcttcatcaaatctataaacataatcaattttataac 14682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 16956167 - 16956209
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataac 91  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  16956167 tcattatcttcatcaaatctataaacataatcaattttataac 16956209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 25443240 - 25443301
Alignment:
Q  49 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| | |||||||||    
T  25443240 tcataatcttcatcaaatctataaacataaattaatttcataactcaatctataaccaattt 25443301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 17236299 - 17236350
Alignment:
Q  60 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||||||    
T  17236299 atcaaatctataaacatataatccatttcataactcaatcaataaccaattt 17236350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 30474518 - 30474560
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataac 91  Q
    |||| ||||| |||||||||||||||||| |||||||||||||    
T  30474518 tcatcatcttcatcaaatctataaacatactcaatttcataac 30474560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 9e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 902612 - 902366
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnn-tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaat 107  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902612 catcatcaacaacacaccaacccaggaaaaaaaaatctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaat 902513  T
Q  108 ttgttcactaaagaaaatcagtttaatttaccaaacaacaa-nnnnnnnnnnnnaaatctaaatccaaaaccacaacaattgctatgcttctctaaagat 206  Q
    |||||||||||||||||||||||||||||||||||||||||             ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  902512 ttgttcactaaagaaaatcagtttaatttaccaaacaacaattttttttttttaaaatccaaatccaaaaccacaacaactgctatgcttctctaaagat 902413  T
Q  207 atcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  902412 atcaatgaattaataccttcaccttataactactcatccaatcgtaa 902366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 12261349 - 12261244
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    |||||||||||||||||||||||||         || ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  12261349 catcatcaacaacacaccaacccagatttttttttccttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatt 12261250  T
Q  109 tgttca 114  Q
    | ||||    
T  12261249 ttttca 12261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 901659 - 901708
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  901659 atcaaatctataaacataatctatttcataactcaatcaataaccaattt 901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 27129043 - 27129147
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    |||||||||||||||||||||||||         |||||| ||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  27129043 catcatcaacaacacaccaacccagatttttttttctttt-catcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatt 27129141  T
Q  109 tgttca 114  Q
    | ||||    
T  27129142 ttttca 27129147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 16146315 - 16146383
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  16146315 ttttcatcatcttcaacaaatatataaacaaaatcaatttcataacttaatcaataaccaattttttca 16146383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 20746429 - 20746382
Alignment:
Q  62 caaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  20746429 caaatatataaacataatcaatttcataacttaatcaataaccaattt 20746382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 20746473 - 20746437
Alignment:
Q  62 caaatctataaacataatcaatttcataactcaatca 98  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746473 caaatatataaacataatcaatttcataacttaatca 20746437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 13630290 - 13630529
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    ||||||||||||||||| |||||||         |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13630290 catcatcaacaacacactaacccagaaaaaataatctttttcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 13630389  T
Q  109 tgttcactaaagaaaatcagtttaatttaccaaacaacaannnnnnnnnnnnaaatctaaatccaaaaccacaacaattgctatgcttctctaaagatat 208  Q
    ||||||||||| ||||||| ||||||||||||||||| |             ||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  13630390 tgttcactaaa-aaaatcactttaatttaccaaacaata---ttttttttttaaatccaaatccaaaaccacaac-actgctatgcttctctaaagatat 13630484  T
Q  209 caatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  13630485 caatgaactaataccttcaccttataactactcatccaatcgtaa 13630529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 44183636 - 44183542
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaaca 144  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  44183636 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaaca 44183542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 45044613 - 45044711
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  45044613 tcatcatcttcatcaaatatataaacataatcaatttcataactcaatcaataaccaatttgttcactaaa-aaaatcactttaatttaccaaacaacaa 45044711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 50282748 - 50282652
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 146  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||    
T  50282748 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaagtcactttaatttaccaaacaac 50282652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 44183494 - 44183420
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  44183494 acaacaattgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaa 44183420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 9091805 - 9091879
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||    
T  9091805 acaacaattgctatgcttctctaaagatatcaataaactaatactttcaccttataactactcatccaattgtaa 9091879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 9091624 - 9091758
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    ||||||||||||||||||||||||||        | |||| ||| ||||| ||||||||||||||| || |||||||||||||||||| ||||| |||||    
T  9091624 catcatcaacaacacaccaacccaggaaaaaaaatatttt-catcatcttcatcaaatctataaacgtattcaatttcataactcaattaacaagcaatt 9091722  T
Q  109 tgttcactaaagaaaatcagtttaatttaccaaacaac 146  Q
    ||||||  ||  ||||||| ||||||||||||||||||    
T  9091723 tgttcatgaa--aaaatcactttaatttaccaaacaac 9091758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 50282608 - 50282534
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    ||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||||    
T  50282608 acaacaactgctatgcttctctaaaaatatcaataaactaataccttcaccttataactactcatcaaattgtaa 50282534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 9087158 - 9087095
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  9087158 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattt 9087095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 45045108 - 45045065
Alignment:
Q  48 ttcattatctttatcaaatctataaacataatcaatttcataac 91  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  45045108 ttcatcatcttcatcaaatctataaacataatcaatttcataac 45045065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 26281059 - 26281017
Alignment:
Q  55 tctttatcaaatctataaacataatcaatttcataactcaatc 97  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  26281059 tcttcatcaaatctataaacataaacaatttcatatctcaatc 26281017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 26280323 - 26280372
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||| |||||||||||| ||||||||| || |||||| |||||||||    
T  26280323 atcaaatttataaacataatgaatttcatatcttaatcaataaccaattt 26280372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 44182798 - 44182845
Alignment:
Q  60 atcaaatctataaacata--atcaatttcataactcaatcaacaacca 105  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  44182798 atcaaatctataaacatataatccatttcataactcaatcaataacca 44182845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 50281915 - 50281966
Alignment:
Q  60 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||||||||||||||  ||| |||||||||||||||||| || ||||||    
T  50281915 atcaaatctataaacatataatccatttcataactcaatcaataatcaattt 50281966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 54834173 - 54834272
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  54834173 tcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttattcactaaaaaaaatcactttaatttaccaaacaacaa 54834272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 52255343 - 52255247
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 146  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  52255343 tcatcatcttcatcatatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaacaac 52255247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 52255203 - 52255129
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  52255203 acaacaactgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcttccaattgtaa 52255129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 34817530 - 34817634
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    |||||||||||||||||||||||||         || ||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  34817530 catcatcaacaacacaccaacccag-attttttttccttttcatcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaatt 34817628  T
Q  109 tgttca 114  Q
    | ||||    
T  34817629 ttttca 34817634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 33389411 - 33389461
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaa 99  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33389411 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa 33389461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 32305129 - 32305024
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    ||||||||||||||||||||||||          || ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  32305129 catcatcaacaacacaccaacccaaatttttttttccttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatt 32305030  T
Q  109 tgttca 114  Q
    | ||||    
T  32305029 ttttca 32305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 42541059 - 42540954
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    ||||||||||||||||||||||||          || ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  42541059 catcatcaacaacacaccaacccatatttttttttccttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatt 42540960  T
Q  109 tgttca 114  Q
    | ||||    
T  42540959 ttttca 42540954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 52254514 - 52254564
Alignment:
Q  60 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 108  Q
    ||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  52254514 atcaaatctataaacatataatccatttcataactcaatcaataaccaatt 52254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 38385111 - 38385209
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  38385111 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaa-aaaatcactttaatttaccaaacaacaa 38385209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 6794603 - 6794535
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  6794603 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 6794535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 23082776 - 23082844
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| |  |||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  23082776 ttttcatcatcttcaataaatatataaacataatcaatttcataacttaatcaataaccaattttttca 23082844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 38385619 - 38385577
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataac 91  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  38385619 tcatcatcttcatcaaatctataaacataatcaatttcataac 38385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 13824458 - 13824397
Alignment:
Q  49 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||    
T  13824458 tcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 13824397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 24041980 - 24042041
Alignment:
Q  49 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||    
T  24041980 tcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 24042041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 24509277 - 24509185
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaa 142  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  24509277 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaa 24509185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 52751375 - 52751290
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaa 145  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  52751375 atcaaatctataaacaaaatcaatttcataactcaatcaacaaccaatttgttcactaaaaaaaagcactttaatttaccaaacaa 52751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 50124416 - 50124321
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 148  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  50124416 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa----caatttgttcactaaaaaaaatcactttaatttaccaaacaacaa 50124321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 24509142 - 24509068
Alignment:
Q  179 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 253  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  24509142 acaacaactgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaa 24509068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 29021826 - 29021890
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaa 124  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29021826 atcaaatctataaacaaaatcaatttcataactcaatcaacaaccaatttgttcactaaaaaaaa 29021890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 23832655 - 23832711
Alignment:
Q  531 gatatcatcatacacatgcaaaaattagtatactagaattacaagaggtcaattact 587  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23832655 gatatcatcatacacatgcaaaatttagtatactagaattacaagaggtcaattact 23832711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 52750392 - 52750452
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52750392 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaattt 52750452  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 31697356 - 31697416
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  31697356 tcatcatcttcatcaaatctataaacataatcaatttcatatctcaatcaataaccaattt 31697416  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 47112331 - 47112397
Alignment:
Q  48 ttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  47112331 ttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 47112397  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 52751137 - 52751084
Alignment:
Q  198 tctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgta 252  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  52751137 tctaaagatatcaatgaattaatatcctcaccttat-actactcatccaatcgta 52751084  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 36142350 - 36142413
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| || ||||||    
T  36142350 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataatcaattt 36142413  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 968164 - 968213
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||| |||||||||||||||||||||| || |||||| |||||||||    
T  968164 atcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968213  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 968215 - 968264
Alignment:
Q  60 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||||| |||||||||||||||||||||| || |||||| |||||||||    
T  968215 atcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968264  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 968968 - 968917
Alignment:
Q  63 aaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    |||||||||||||||| |||||||||| |||||||||  |||||||| ||||    
T  968968 aaatctataaacataaacaatttcatatctcaatcaatcaccaattttttca 968917  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 24508445 - 24508506
Alignment:
Q  60 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatttgttcactaaa 119  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| ||||||||| |||| ||||    
T  24508445 atcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaa 24508506  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 10708372 - 10708432
Alignment:
Q  49 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10708372 tcataatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaattt 10708432  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12602406 - 12602345
Alignment:
Q  49 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 109  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  12602406 tcattatcttcatcaaatctataaacattaatcaatttcatatctcaatcaataaccaattt 12602345  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 20685867 - 20685935
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  20685867 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 20685935  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 40468916 - 40468848
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  40468916 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 40468848  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 3093384 - 3093438
Alignment:
Q  54 atctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 109  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3093384 atcttcatcaaatctataaacataat-aatttcataactcaatcaataaccaattt 3093438  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 19298428 - 19298323
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    |||||||||||||||||||||||||         || ||||||| ||||| | ||||| |||||||| |||||||||||||| | |||||| ||||||||    
T  19298428 catcatcaacaacacaccaacccagatttttttttccttttcatcatcttcaacaaatatataaacaaaatcaatttcataatttaatcaataaccaatt 19298329  T
Q  109 tgttca 114  Q
    | ||||    
T  19298328 ttttca 19298323  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 8029814 - 8029762
Alignment:
Q  62 caaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  8029814 caaatatataaacataatcaatttcataacttaatcaataaccaattttttca 8029762  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 28189646 - 28189751
Alignment:
Q  9 catcatcaacaacacaccaacccaggnnnnnnnntctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatt 108  Q
    |||||||||||||||||||||||||         |  ||||||| ||||| |  |||| ||||||||||||||||||||||||| |||||| || |||||    
T  28189646 catcatcaacaacacaccaacccagattttttttttcttttcatcatcttcaataaatatataaacataatcaatttcataacttaatcaataatcaatt 28189745  T
Q  109 tgttca 114  Q
    | ||||    
T  28189746 ttttca 28189751  T

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Target: scaffold0202 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 22029 - 21961
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  22029 ttttcatcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttca 21961  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 13462342 - 13462410
Alignment:
Q  46 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 114  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  13462342 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 13462410  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 9319159 - 9319119
Alignment:
Q  43 tctttttcattatctttatcaaatctataaacataatcaat 83  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  9319159 tctttttcatcatcttcatcaaatctataaacataatcaat 9319119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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