View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18369_low_12 (Length: 401)

Name: NF18369_low_12
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18369_low_12
NF18369_low_12
[»] chr4 (3 HSPs)
chr4 (232-401)||(28926194-28926362)
chr4 (145-208)||(28926128-28926193)
chr4 (30-62)||(12325692-12325724)
[»] chr8 (7 HSPs)
chr8 (105-168)||(18973961-18974025)
chr8 (18-62)||(14674485-14674529)
chr8 (21-62)||(18974332-18974373)
chr8 (58-117)||(31709404-31709462)
chr8 (26-62)||(31710091-31710127)
chr8 (58-94)||(14673771-14673808)
chr8 (58-117)||(18973669-18973727)
[»] chr7 (3 HSPs)
chr7 (105-168)||(5331849-5331913)
chr7 (21-62)||(5331501-5331542)
chr7 (58-117)||(5332147-5332205)
[»] chr3 (5 HSPs)
chr3 (105-168)||(19807678-19807742)
chr3 (21-62)||(19807330-19807371)
chr3 (26-60)||(12208029-12208063)
chr3 (58-117)||(12208669-12208727)
chr3 (58-117)||(19807976-19808034)
[»] chr6 (2 HSPs)
chr6 (18-62)||(4281728-4281772)
chr6 (58-117)||(4282395-4282453)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 232 - 401
Target Start/End: Original strand, 28926194 - 28926362
Alignment:
Q  232 atggataagcttgtgagttcatccaacaaataatataaataaaatatgatggatctatgaggctaacatgacatatgctatgtgcatcaattaaagttaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  28926194 atggataagcttgtgagttcatccaacaaataatataaataaaatatgatggatctatgaggctaacgtgacatatgctatgtgcatcaattaaaattaa 28926293  T
Q  332 catagtatatatgtgaatatatnnnnnnncggcgtgtatgtgtgagccgttaatattcaattactaacca 401  Q
    ||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||    
T  28926294 catagtatatatgtgaatatat-aagaaacggcgtgtatgtgtgagccgctaatattcaattactaacca 28926362  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 28926128 - 28926193
Alignment:
Q  145 taacactcatggtatatctataattgccaacatacatgg--tatatatataattgttataattcca 208  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  28926128 taacactcatggtatatctataattgccaacatacatggtatatatatataattgttataattcca 28926193  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 12325724 - 12325692
Alignment:
Q  30 atatatccaccgaaaaaccaatgcagatatgaa 62  Q
    |||||||||||||||||||||||||||||||||    
T  12325724 atatatccaccgaaaaaccaatgcagatatgaa 12325692  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 18974025 - 18973961
Alignment:
Q  105 ttactgatatttatggagccaaacgtaat-aactagcttattaacactcatggtatatctataat 168  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  18974025 ttactgatatttatggagccaatcgtaattaactagcttattaacactcatggtatatctataat 18973961  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 14674529 - 14674485
Alignment:
Q  18 cacagtgcatatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14674529 cacagtgcatatatatatccaccgaaaaaccaatgcagatatgaa 14674485  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 18974373 - 18974332
Alignment:
Q  21 agtgcatatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18974373 agtgcatatatatatccaccgaaaaaccaatgcagatatgaa 18974332  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 31709462 - 31709404
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||| ||||||||||||||||    
T  31709462 atgaacggagagtaacaaagttagaaagtaacaacc--tgacacggtattactgatattta 31709404  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 31710127 - 31710091
Alignment:
Q  26 atatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31710127 atatatatatccaccgaaaaaccaatgcggatatgaa 31710091  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 14673808 - 14673771
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctg 94  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14673808 atgaacggagagtaacaaagttagaaagtaacaacctg 14673771  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 18973727 - 18973669
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||| ||||||||||||  || ||| ||||||||||||||||    
T  18973727 atgaacggagagtaacaaagttacaaagtaacaacc--tgacacggtattactgatattta 18973669  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 5331849 - 5331913
Alignment:
Q  105 ttactgatatttatggagccaaacgtaat-aactagcttattaacactcatggtatatctataat 168  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  5331849 ttactgatatttatggagccaatcgtaattaactagcttattaacactcatggtatatctataat 5331913  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 5331501 - 5331542
Alignment:
Q  21 agtgcatatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5331501 agtgcatatatatatccaccgaaaaaccaatgcagatatgaa 5331542  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 5332147 - 5332205
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||| ||||||||||||||||    
T  5332147 atgaacggagagtaacaaagttagaaagtaacaacc--tgacacggtattactgatattta 5332205  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 19807678 - 19807742
Alignment:
Q  105 ttactgatatttatggagccaaacgtaat-aactagcttattaacactcatggtatatctataat 168  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19807678 ttactgatatttatggagccaatcgtaattaactagcttattaacactcatggtatatctataat 19807742  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 19807330 - 19807371
Alignment:
Q  21 agtgcatatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  19807330 agtgcatatatatatccaccgaaaaaccaatgcatatatgaa 19807371  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 12208063 - 12208029
Alignment:
Q  26 atatatatatccaccgaaaaaccaatgcagatatg 60  Q
    |||||||||||||||||||||||||||||||||||    
T  12208063 atatatatatccaccgaaaaaccaatgcagatatg 12208029  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 12208669 - 12208727
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||| ||||||||||||||||    
T  12208669 atgaacggagagtaacaaagttagaaagtaacaacc--tgacacggtattactgatattta 12208727  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 19807976 - 19808034
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||| ||||||||||||||||    
T  19807976 atgaacggagagtaacaaagttagaaagtaacaacc--tgacacggtattactgatattta 19808034  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 4281728 - 4281772
Alignment:
Q  18 cacagtgcatatatatatccaccgaaaaaccaatgcagatatgaa 62  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  4281728 cacagtgcatatatatatctaccgaaaaaccaatgcagatatgaa 4281772  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 4282395 - 4282453
Alignment:
Q  58 atgaacggagag-aacaaagttagaaagtaacaacctgtggcacagtattactgatattta 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||| ||||||||||||||||    
T  4282395 atgaacggagagtaacaaagttagaaagtaacaacc--tgacacggtattactgatattta 4282453  T

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