View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_15 (Length: 297)
Name: NF18369_low_15
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 27 - 282
Target Start/End: Complemental strand, 14174773 - 14174517
Alignment:
| Q |
27 |
gttctttgatattgctacgaacacatggtaacatt-gtggccctgacacaaaaaatattgatgctgcggtccaaatcgtgtatgtgaatcttggttataa |
125 |
Q |
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| T |
14174773 |
gttctttgatattgctacgaacacatggtaacatttgtggccatgacacaaaaaatattgatgctgcggtccaaatcgtgtatgtgaatcttggttataa |
14174674 |
T |
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| Q |
126 |
tccatgattttgaattgtgtaggatgggggactgatgagaagagtgttatcacaatattgggtcatagaaatgtttatcagagacaacaaatcagaaaat |
225 |
Q |
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| T |
14174673 |
tccatgattttgaattgtgtaggatgggggactgatgagaagagtgttatcacaatattaggtcatagaaatgtttatcagagacaacaaatcagaaaat |
14174574 |
T |
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| Q |
226 |
cttatcaggaaatttaccaagaggatatcctcaaacgccttgaatctgaactctctg |
282 |
Q |
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| T |
14174573 |
cttatcaggaaatttaccaagaggatatcctcaaacgccttgaatctgaactctctg |
14174517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 14153173 - 14153075
Alignment:
| Q |
184 |
tgggtcatagaaatgtttatcagagacaacaaatcagaaaatcttatcaggaaatttaccaagaggatatcctcaaacgccttgaatctgaactctctg |
282 |
Q |
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| T |
14153173 |
tgggtcagagaaatgctgttcaaaggcaacaaattagacaagcttatcaggacatttatcaagaggatctcatcaaacgccttgaatctgaactctctg |
14153075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 14167776 - 14167689
Alignment:
| Q |
143 |
tgtaggatgggggactgatgagaagagtgttatcacaatattgggtcatagaaatgtttatcagagacaacaaatcagaaaatcttat |
230 |
Q |
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| T |
14167776 |
tgtaggatggggtactgatgagaagacagtgataacaatacttggtcatagaaactctaatcagatacagcaaatcagaaaagcttat |
14167689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 5180061 - 5180151
Alignment:
| Q |
178 |
caatattgggtcatagaaatgtttatcagagacaacaaatcagaaaatcttatcaggaaatttaccaagaggatatcctcaaacgccttga |
268 |
Q |
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| T |
5180061 |
caattttgggtcatagaaatgttcatcagaggcaacagattagaaaagcttatgaggagcttttcgaagaggatctcatcaaacgtcttga |
5180151 |
T |
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