View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_17 (Length: 263)
Name: NF18369_low_17
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 2088735 - 2088506
Alignment:
| Q |
15 |
atgaacaataaagcgctaaatcgctaaataaataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacata |
114 |
Q |
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| T |
2088735 |
atgaacaataaagcgctaaatcgctaaataaataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacata |
2088636 |
T |
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| Q |
115 |
agctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagtatattgtttagaaaagaaaaatgaatca |
214 |
Q |
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| T |
2088635 |
agctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagtatattgtttagaaaagaaaaatgaatca |
2088536 |
T |
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| Q |
215 |
gctccataatatataacctcagcagcatat |
244 |
Q |
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| T |
2088535 |
gctccataatatataacctcagcagcatat |
2088506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 2098451 - 2098319
Alignment:
| Q |
76 |
agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
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| T |
2098451 |
agtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatgagcattgttgatgttccataaacctttcagctgttgcaaaa-caataa |
2098353 |
T |
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| Q |
176 |
catatcttagtatattgtttagaaaagaaaaatg |
209 |
Q |
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| T |
2098352 |
catatgttggtaaattgtttagaaaagaaaaatg |
2098319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 2106909 - 2106779
Alignment:
| Q |
76 |
agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
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| T |
2106909 |
agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttgcaaaa-caataa |
2106811 |
T |
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| Q |
176 |
catatcttagtatattgtttagaaaagaaaaatg |
209 |
Q |
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| T |
2106810 |
c--atgttggtaaattgtttagaaaagaaaaatg |
2106779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 2054499 - 2054364
Alignment:
| Q |
45 |
aataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttac |
144 |
Q |
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| T |
2054499 |
aataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaatactggttgttgattttcc |
2054400 |
T |
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| Q |
145 |
atgaacccttaaactgttgcaaaaccaataacatat |
180 |
Q |
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| T |
2054399 |
atgaacccagaaactgttgcaaaaccaataacatat |
2054364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 2102689 - 2102603
Alignment:
| Q |
89 |
cttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
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| T |
2102689 |
cttcagctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataa |
2102603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 2065607 - 2065558
Alignment:
| Q |
157 |
actgttgcaaaaccaataacatatcttagtatattgtttagaaaagaaaa |
206 |
Q |
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| T |
2065607 |
actgttgcaaaacaaataacatatgttggtaaattgtttagcaaagaaaa |
2065558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 2058369 - 2058333
Alignment:
| Q |
144 |
catgaacccttaaactgttgcaaaaccaataacatat |
180 |
Q |
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| T |
2058369 |
catgaacccaaaaactgttgcaaaaccaataacatat |
2058333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 39182998 - 39183084
Alignment:
| Q |
89 |
cttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
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| T |
39182998 |
cttcagctccacagcctcattacaaaggttccttaaatttgggttgttgactttccaggaaccctcaaactgttgcaaaaccaataa |
39183084 |
T |
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