View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_25 (Length: 215)
Name: NF18369_low_25
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 5972696 - 5972569
Alignment:
| Q |
12 |
cataggcaacaatattccaacaaaggttttaattttggttcatcaataagttttgaaatattcttcatgatttcatggttctttcgcctatcccccaagc |
111 |
Q |
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| T |
5972696 |
cataggcaacaatattccaacaaaggttttaattttggttcattaataagttttgaaatattcttcatgatttcatggttctttcgcctatcccccaagc |
5972597 |
T |
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| Q |
112 |
cgaagagacatcaagatgaaaatacgag |
139 |
Q |
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| T |
5972596 |
cgaagagacatcaagatgaaaatacgag |
5972569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 5972549 - 5972503
Alignment:
| Q |
147 |
tcacaattcctctttcgccagatagtgctaggttgaatggtcatttt |
193 |
Q |
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| T |
5972549 |
tcacaattcctctttcgccggatagtgctaggttgaatggtcatttt |
5972503 |
T |
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