View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_5 (Length: 585)
Name: NF18369_low_5
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_5 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 49972195 - 49971766
Alignment:
| Q |
19 |
atacgtacttgcaagacaagttagggatatattgttagggagttgcaagacataaagaagaaaattgatttgtatgatgaggagtgactcttctttatat |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49972195 |
atacgtacatgcaagacaagttagggatatattgttagggagttgcaagacataaagaagaaaattgatttgtatgatgaggagtgactcttctttatat |
49972096 |
T |
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| Q |
119 |
a----ctcttatcaagagtcatatgatattgcaataatcatgtccccccggcggctaggacattcaattccaattcnnnnnnnnnnnnnnnnnnncagaa |
214 |
Q |
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| T |
49972095 |
atatactcttatcaagagtcatatgatattgcaataatcatgtccccccggcggctaggacattcaattccaattcaagaagaagaaga------cagaa |
49972002 |
T |
|
| Q |
215 |
tcagtgctctcccagattcacttcttattcacattctttcttttcttcctacctaaaatgccgccgtcacaatcattctcttcttctcgcaactcattct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49972001 |
tcagtgctctcccagattcacttcttattcacattctttcttttcttcctaccaaaaatgccgccgtcacaatcatcctcttcttctcgcaactcattct |
49971902 |
T |
|
| Q |
315 |
caatttcgatgaaaatcataaaggnnnnnnnttatgcagggcacattgggaggacccagatattgttccggaatgtcttttatagcatcttacaaagtgt |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
49971901 |
caatttcgatgaaaatcataaaggaaaaaaattatgcagggcacattgggaggacccagatattgttccgaaatgtcttttatcgcatcttacaaagtgt |
49971802 |
T |
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| Q |
415 |
tcacttaaaattgacagcagtctaagttggaagttt |
450 |
Q |
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| T |
49971801 |
tcacttaaaattgacagcagtctaagttggaagttt |
49971766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 473 - 575
Target Start/End: Complemental strand, 49971695 - 49971593
Alignment:
| Q |
473 |
tagatacagatgcaaaagaacaaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaatactgccacaggt |
572 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
49971695 |
tagatacagatgcaaaacaccaaatgttcatggaattatctttgtgcgcaaggaattcggcagtgtgtcaacttttatttatttgcatactgccacaggt |
49971596 |
T |
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| Q |
573 |
tct |
575 |
Q |
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||| |
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| T |
49971595 |
tct |
49971593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 2066 - 1999
Alignment:
| Q |
493 |
caaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaat |
560 |
Q |
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| T |
2066 |
caaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaat |
1999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 3963 - 3910
Alignment:
| Q |
210 |
cagaatcagtgctctcccagattcacttcttattcacattctttcttttcttcc |
263 |
Q |
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| T |
3963 |
cagaatcagtgctctaccggattcacttctttatcacattctttcttttcttcc |
3910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 3612 - 3545
Alignment:
| Q |
493 |
caaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaat |
560 |
Q |
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| T |
3612 |
caaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaat |
3545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 5509 - 5456
Alignment:
| Q |
210 |
cagaatcagtgctctcccagattcacttcttattcacattctttcttttcttcc |
263 |
Q |
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||||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
5509 |
cagaatcagtgctctaccggattcacttctttatcacattctttcttttcttcc |
5456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 43288339 - 43288293
Alignment:
| Q |
88 |
ttgtatgatgaggagtgactcttctttatatactcttatcaagagtc |
134 |
Q |
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| T |
43288339 |
ttgtaagatgaggagtgcctcctctttataaactcttatcaagagtc |
43288293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 8902424 - 8902382
Alignment:
| Q |
96 |
tgaggagtgactcttctttatatactcttatcaagagtcatat |
138 |
Q |
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| T |
8902424 |
tgaggagtgtctcatctttataaactcttatcaagagtcatat |
8902382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 10542092 - 10542137
Alignment:
| Q |
88 |
ttgtatgatgaggagtgactcttctttatatactcttatcaagagt |
133 |
Q |
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| T |
10542092 |
ttgtaagatgaggagtgtctcctctttataaactcttatcaagagt |
10542137 |
T |
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