View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_6 (Length: 572)
Name: NF18369_low_6
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 44884512 - 44883956
Alignment:
| Q |
1 |
ctcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884512 |
ctcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagta |
44884413 |
T |
|
| Q |
101 |
ccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaaccct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884412 |
ccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaaccct |
44884313 |
T |
|
| Q |
201 |
tctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44884312 |
tctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcatggtttg |
44884213 |
T |
|
| Q |
301 |
tggaagctctcaacaactcagggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884212 |
tggaagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattag |
44884113 |
T |
|
| Q |
401 |
tgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaac |
500 |
Q |
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| T |
44884112 |
tgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaac |
44884013 |
T |
|
| Q |
501 |
atgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggt |
557 |
Q |
| |
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| T |
44884012 |
atgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggt |
44883956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 221 - 481
Target Start/End: Original strand, 8994206 - 8994463
Alignment:
| Q |
221 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
320 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
8994206 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
8994305 |
T |
|
| Q |
321 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
420 |
Q |
| |
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|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
8994306 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
8994405 |
T |
|
| Q |
421 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
481 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
8994406 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
8994463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 221 - 481
Target Start/End: Original strand, 9028863 - 9029120
Alignment:
| Q |
221 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
320 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
9028863 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
9028962 |
T |
|
| Q |
321 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
420 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
9028963 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
9029062 |
T |
|
| Q |
421 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
481 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9029063 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 9019385 - 9019466
Alignment:
| Q |
182 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcc |
263 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| |
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| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactgctatttcc |
9019466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 9007176 - 9007288
Alignment:
| Q |
428 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------ggaggaggaggagaagaacatgtttaattattca |
515 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||||| |||||| |||||||||||||||||||| |
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| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaagaggaggagaacatgtttaattattca |
9007275 |
T |
|
| Q |
516 |
attgctaatcttc |
528 |
Q |
| |
|
|||||||||||| |
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| T |
9007276 |
gttgctaatcttc |
9007288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 8994479 - 8994528
Alignment:
| Q |
479 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttc |
528 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
8994479 |
ggaggaagaggaggaggagaacatgtttaattattcagttgctaatcttc |
8994528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 9029136 - 9029185
Alignment:
| Q |
479 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttc |
528 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||| |||||||||||| |
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| T |
9029136 |
ggaggaagaggaggaggagaacatgtttaattaatcagttgctaatcttc |
9029185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
79 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
133 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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