View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_7 (Length: 541)
Name: NF18369_low_7
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 8517302 - 8517797
Alignment:
| Q |
15 |
caaaggggttggagtctaaacatgacaaggggaccctatgaattgataaacatgtgaagccatgttactcttgtctcctaaattcttctatagagacaaa |
114 |
Q |
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| T |
8517302 |
caaaggggttggagtctaaacatgacaaggggaccctatgaattgataaacatgtgaagccatgttactcttgtctcctaaattcttctatagagacaaa |
8517401 |
T |
|
| Q |
115 |
acaaggcaggcaccaatggtcgcataagcagtaaaaaggtttatggttaaaccaatcaacacatctcctctctcattaccaaccaaacgattctgtcttg |
214 |
Q |
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| T |
8517402 |
acaaggcaggcaccaatggtcgcataagcagtaaaaaggtttatggttaaaccaatcaacacatctcctctctcattaccaaccaaacgattctgtcttg |
8517501 |
T |
|
| Q |
215 |
taaatcgttgtcatgtaaagtttcatctatgctattaaaggtataaacaaaataagttgttttccatgcagaaagtacttgatgtacacagttcaatatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8517502 |
taaatcgttgtcatgtaaagtttcatctatgctattaaaggtataaacaaaataagttgttttcaatgcagaaagtacttgatgtacacagttcaatatt |
8517601 |
T |
|
| Q |
315 |
taaccatgacgaggggagggaatcatttaattaatcggatgaacaannnnnnnnnnnnnnnnnnnnntttggtacaatggatgaacaattttataatcaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
8517602 |
taaccatgacgaggggagggaatcatttaattaatcggatgaacaa------attattattattatttttggtacaatggatgaagaattttataatcaa |
8517695 |
T |
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| Q |
415 |
ataagaaatgaacatttgtcagtg---ttactattcaaagtctcacgttaaataccaacaaacaatgaattggtccaactgataagagaccagaactcct |
511 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
8517696 |
ataagaaatgaacatttgtcagtgttattattattcaaagtctcacgttaaataccaacaaacaatgaattggtccaa-----aagagactagaactcct |
8517790 |
T |
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