View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_8 (Length: 471)
Name: NF18369_low_8
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 21 - 455
Target Start/End: Complemental strand, 32843975 - 32843541
Alignment:
| Q |
21 |
tcttctctgattcaccatcaacttccaaagcttttccttcttttcttgttggatttccaaaaccacccttttcaaattccaccctcaaaatcaaaacttg |
120 |
Q |
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| T |
32843975 |
tcttctctgattcaccatcaacttccaaagcttttccttcttttcttgttggatttccaaaaccacccttttcaaattccaccctcaaaatcaaaacttg |
32843876 |
T |
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| Q |
121 |
ttttgcttcatcaattcaacaagaaaatgggtcaccagaacagtttctaaaaagcaattcctcagctgatttcatgaggttcaagaaaggaattgatggt |
220 |
Q |
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| T |
32843875 |
ttttgcttcatcaattcaacaagaaaatgggtcaccagaacagtttctacaaagcaattccattgctgatttcatgaggttcaagaaaggaattgatggt |
32843776 |
T |
|
| Q |
221 |
tctactggtttgttgcagactgctgttgttagatataagaagaagtttccttggtctcttttgaagccaaatcttcaggttggtgtaaagtttgtgtctt |
320 |
Q |
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| T |
32843775 |
tctactggtttgttgcagactgctgttgttaaatataagaagaagtttccttggtctcttttgaagccaaatcttcaggttggtgtaaagtttgtgcctt |
32843676 |
T |
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| Q |
321 |
tcttgttttttctcaatcgggttttgttttcttagattggtttcttgatgctatnnnnnnnnnnnnnnnnnnnnnnaggttgatttggtttcaacaattc |
420 |
Q |
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| T |
32843675 |
tcttgttttttctcaatcgggttttgttttcttagattggtttcttgatgctatttgttgttgttgttgttgttgtaggttgatttgatttcaacaattc |
32843576 |
T |
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| Q |
421 |
acatagctgataaaaagtatgtattgtttatcttg |
455 |
Q |
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||||||||||| || |||||||||||||||||||| |
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| T |
32843575 |
acatagctgatgaagagtatgtattgtttatcttg |
32843541 |
T |
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