View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18369_low_9 (Length: 449)
Name: NF18369_low_9
Description: NF18369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18369_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 1744332 - 1744749
Alignment:
| Q |
16 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1744332 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc |
1744431 |
T |
|
| Q |
116 |
ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatgcctaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1744432 |
ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattgtcttattcttatttcctagtgtcaagatggatgcctact |
1744531 |
T |
|
| Q |
216 |
aaaaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttaaaaagtataatttta--gtgtctt |
313 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
1744532 |
aacaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttagaaagtataattttagtgtgtcct |
1744631 |
T |
|
| Q |
314 |
atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1744632 |
atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtg |
1744731 |
T |
|
| Q |
414 |
ttcatgatgttttgccat |
431 |
Q |
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| T |
1744732 |
ttcatgatgtgttgccat |
1744749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 1722223 - 1722425
Alignment:
| Q |
16 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatca--------ccaagggcacta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
1722223 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatccttagttggctataaaacgagtaccaagggcacta |
1722322 |
T |
|
| Q |
108 |
tttatagcctctgatgaagctttaaaatattgatcaataata-tttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatgg |
206 |
Q |
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| |||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||| |
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| T |
1722323 |
tatatagcctttgatgatgctttaaaatattgatcaataataatttttaaattaatgttgctccacattctcttcttcctatttcctaatctcaagatgg |
1722422 |
T |
|
| Q |
207 |
atg |
209 |
Q |
| |
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||| |
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| T |
1722423 |
atg |
1722425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 23577878 - 23577796
Alignment:
| Q |
349 |
tcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtgttcatgatgttttgccat |
431 |
Q |
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|||||||||||| ||| | |||||||| ||||||||||||||| |||| |||||| || ||||||||||||||| ||||||| |
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| T |
23577878 |
tcaaagatattcaaatccacacattgatgaatcaagaatagacctttccaatctttcttcttgtgttcatgatgtgttgccat |
23577796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 31822029 - 31821919
Alignment:
| Q |
318 |
accctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtgttca |
417 |
Q |
| |
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|||||||||||| || ||||||| ||| | ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||| || |||||||| |
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| T |
31822029 |
accctttgttgtctcatcttcaattatcctatcaaagatatttgaattcacacattggtgaatcaagaatagactttt-gcatctttcttgatgtgttca |
31821931 |
T |
|
| Q |
418 |
tgatgttttgcc |
429 |
Q |
| |
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||||| ||||| |
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| T |
31821930 |
cgatgtgttgcc |
31821919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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