View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_1 (Length: 913)
Name: NF1836_high_1
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 309 - 896
Target Start/End: Original strand, 42798249 - 42798834
Alignment:
| Q |
309 |
atatcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
408 |
Q |
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| T |
42798249 |
atatcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
42798346 |
T |
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| Q |
409 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
508 |
Q |
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| T |
42798347 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagttaatgtagttataagttcattta |
42798446 |
T |
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| Q |
509 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatccatgacaggcagggaagtgtaga |
608 |
Q |
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| T |
42798447 |
gacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacaggcagggaagtgtaga |
42798546 |
T |
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| Q |
609 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagtaactggatctgttgct |
708 |
Q |
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| T |
42798547 |
gcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagtaactggatctgttgct |
42798646 |
T |
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| Q |
709 |
tttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagca |
808 |
Q |
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| T |
42798647 |
tttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagtacaggttttaaagca |
42798746 |
T |
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| Q |
809 |
gtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtcttatc |
896 |
Q |
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| T |
42798747 |
gtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtcttatc |
42798834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 42797616 - 42797791
Alignment:
| Q |
1 |
gtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaacttctttggaagataagatgtgt |
100 |
Q |
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| T |
42797616 |
gtgagcctgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaacttctttggaagataagatgtgt |
42797702 |
T |
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| Q |
101 |
catttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
189 |
Q |
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| T |
42797703 |
catttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
42797791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 42798152 - 42798208
Alignment:
| Q |
183 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagttgtgc |
239 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagttgtgc |
42798208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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