View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_10 (Length: 616)
Name: NF1836_high_10
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 149 - 601
Target Start/End: Complemental strand, 44967778 - 44967326
Alignment:
| Q |
149 |
aaccttctacaatcaaatcagttgcaatcttctcagcaatctgtcatgcaacagccttccatgatgcaaacatcttctttatctagcattcagcacaatc |
248 |
Q |
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| T |
44967778 |
aaccttctacaatcaaatcagttgcaatcttctcagcaatctgtcatgcaacagccttccatgatgcaaacatcttctttatctagcattcagcacaatc |
44967679 |
T |
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| Q |
249 |
agcaatctaataatggtcaacagtcaacacagtccatgcttcagcaacacccccaggttatcaggcagcagcagcaacaacaaacttctattatgcatca |
348 |
Q |
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| T |
44967678 |
agcaatctaataatggtcaacagtcaacacagtccatgcttcagcaacacccccaggttatcaggcagcagcagcaacaacagacttctattatgcatca |
44967579 |
T |
|
| Q |
349 |
gcaacaaacaccaataactcaacagtcaattttgcctcaacaacagcagccgcagcaacagcttatgggtcaacaggcaaatgcaaccaacatgcaacac |
448 |
Q |
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| T |
44967578 |
gcaacaaacaccaataactcaacagtcaattttgcctcaacaacagcagccgcagcaacagcttatgggtcaacaggcaaatgcaaccaacatgcaacac |
44967479 |
T |
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| Q |
449 |
aaccagatacttgggccacagaataatgttggtgatttgcagcaatcacaaaggttacttgcccaacagaataatctttcaaacttgcaacagcagaaac |
548 |
Q |
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| T |
44967478 |
aaccagatacttgggccacagaataatgttggtgatttgcagcaatcacaaaggttacttgcccaacagaataatctttcaaacttgcaacagcagaaac |
44967379 |
T |
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| Q |
549 |
taataaatcagcaaaacaacctatcaaatataaatcagcagttgggaaataat |
601 |
Q |
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| T |
44967378 |
taataaatcagcaaaacaacctatcaaatataaatcagcagttgggaaataat |
44967326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 44967912 - 44967848
Alignment:
| Q |
15 |
cacagaatccacaacagtatctgtaccaacagcagcttttgaggcaaaagcttcagatgcaatct |
79 |
Q |
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| T |
44967912 |
cacagaatccacaacagtatctgtaccaacagcagcttttgaggcaaaagcttcagatgcaatct |
44967848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 228 - 373
Target Start/End: Original strand, 2038116 - 2038255
Alignment:
| Q |
228 |
tatctagcattcagcacaatcagcaatctaataatggtcaacagtcaacacagtccatgcttcagcaacacccccaggttatcaggcagcagcagcaaca |
327 |
Q |
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|||||||| ||| || |||||||| |||||||||| |||||||||||||||||| | ||||||||||| |||| |||| ||||||||| || |
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| T |
2038116 |
tatctagccttccacagaatcagcagtctaataatgttcaacagtcaacacagtctagacttcagcaacattcccaaattattaggcagcag------ca |
2038209 |
T |
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| Q |
328 |
acaaacttctattatgcatcagcaacaaacaccaataactcaacag |
373 |
Q |
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| T |
2038210 |
acagaattctattgttaatcagcaacaaacaccaatgattcaacag |
2038255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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