View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_104 (Length: 240)

Name: NF1836_high_104
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_104
NF1836_high_104
[»] chr1 (6 HSPs)
chr1 (155-222)||(11375518-11375585)
chr1 (9-48)||(13433001-13433040)
chr1 (148-188)||(34624493-34624533)
chr1 (1-48)||(11912118-11912165)
chr1 (1-49)||(26622688-26622736)
chr1 (1-49)||(32798941-32798989)
[»] chr4 (7 HSPs)
chr4 (68-147)||(4841019-4841098)
chr4 (68-147)||(5161483-5161562)
chr4 (68-147)||(5183766-5183845)
chr4 (68-135)||(5215310-5215377)
chr4 (68-147)||(4855525-4855604)
chr4 (76-147)||(5174432-5174503)
chr4 (76-147)||(5197173-5197244)
[»] chr8 (1 HSPs)
chr8 (149-188)||(13956035-13956074)
[»] chr7 (6 HSPs)
chr7 (150-188)||(15660099-15660137)
chr7 (150-188)||(18846468-18846506)
chr7 (181-222)||(15660143-15660184)
chr7 (181-222)||(18846421-18846462)
chr7 (154-188)||(47790500-47790534)
chr7 (20-48)||(15925400-15925428)
[»] chr5 (1 HSPs)
chr5 (13-48)||(12917989-12918024)


Alignment Details
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 11375585 - 11375518
Alignment:
Q  155 gaaccctgagttcctgtacatgtgttggcccaatccacacaagcacaacctctagatgcctgtagaag 222  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  11375585 gaaccctgagttcctatacatgtgttggcccaacccacacaagcacagcttctagaagcctgtagaag 11375518  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 13433001 - 13433040
Alignment:
Q  9 taatatacattatgaatttaacactttctagcacttatca 48  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13433001 taatatacattatgagtttaacactttctagcacttatca 13433040  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 34624533 - 34624493
Alignment:
Q  148 tctgatagaaccctgagttcctgtacatgtgttggcccaat 188  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  34624533 tctgatagaaccctaagctcctgtacatgtgttggcccaat 34624493  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11912165 - 11912118
Alignment:
Q  1 aaagttcctaatatacattatgaatttaacactttctagcacttatca 48  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||||    
T  11912165 aaagtgcctaaaatacattgtgaatttaacacttcctagcacttatca 11912118  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26622688 - 26622736
Alignment:
Q  1 aaagttcctaatatacattatgaatttaacactttctagcacttatcac 49  Q
    ||||| ||||| ||| || ||||||||||||||| ||||||||||||||    
T  26622688 aaagtgcctaaaatatatcatgaatttaacacttcctagcacttatcac 26622736  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32798941 - 32798989
Alignment:
Q  1 aaagttcctaatatacattatgaatttaacactttctagcacttatcac 49  Q
    ||||| ||||| ||| || ||||||||||||||| ||||||||||||||    
T  32798941 aaagtgcctaaaatatatcatgaatttaacacttcctagcacttatcac 32798989  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 4841098 - 4841019
Alignment:
Q  68 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||  ||||||| ||||||| || |||||    
T  4841098 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttagaaatcttcaatgtgtcatacaacaa 4841019  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 5161483 - 5161562
Alignment:
Q  68 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||| || |||||    
T  5161483 tacaataacttgagtggtaagataccttatgagctaacccagttgacctttttatcaaccttcaacgtgtcatacaacaa 5161562  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 5183766 - 5183845
Alignment:
Q  68 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| || ||||  ||||||| ||||||| || |||||    
T  5183766 tacaataacttgagtggtaagattccttatgaactaaccaagttgacctctttagaaatcttcaatgtgtcatacaacaa 5183845  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 5215310 - 5215377
Alignment:
Q  68 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgt 135  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  5215310 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttatcaaccttcaatgt 5215377  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 4855604 - 4855525
Alignment:
Q  68 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||| || ||||  ||| ||| ||||||| || |||||    
T  4855604 tacaataacttgagtggtaagataccttatgaactaaccaagttgacctctttagaaatattcaatgtgtcatacaacaa 4855525  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 5174432 - 5174503
Alignment:
Q  76 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5174432 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5174503  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 5197173 - 5197244
Alignment:
Q  76 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 147  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5197173 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5197244  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 13956074 - 13956035
Alignment:
Q  149 ctgatagaaccctgagttcctgtacatgtgttggcccaat 188  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13956074 ctgatagaaccctgagttcctgtacatgtgttggcccaat 13956035  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 15660099 - 15660137
Alignment:
Q  150 tgatagaaccctgagttcctgtacatgtgttggcccaat 188  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15660099 tgatagaaccctgagttcctgtacatgtgttggcccaat 15660137  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 18846506 - 18846468
Alignment:
Q  150 tgatagaaccctgagttcctgtacatgtgttggcccaat 188  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18846506 tgatagaaccctgagttcctgtacatgtgttggcccaat 18846468  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 15660143 - 15660184
Alignment:
Q  181 ggcccaatccacacaagcacaacctctagatgcctgtagaag 222  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  15660143 ggcccaatccacacaagcacaacctctagaagcctgtagaag 15660184  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 18846462 - 18846421
Alignment:
Q  181 ggcccaatccacacaagcacaacctctagatgcctgtagaag 222  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  18846462 ggcccaatccacacaagcacaacctctagaagcctgtagaag 18846421  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 47790534 - 47790500
Alignment:
Q  154 agaaccctgagttcctgtacatgtgttggcccaat 188  Q
    |||||||||||||||||||||||||||||||||||    
T  47790534 agaaccctgagttcctgtacatgtgttggcccaat 47790500  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 15925400 - 15925428
Alignment:
Q  20 atgaatttaacactttctagcacttatca 48  Q
    |||||||||||||||||||||||||||||    
T  15925400 atgaatttaacactttctagcacttatca 15925428  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 12918024 - 12917989
Alignment:
Q  13 atacattatgaatttaacactttctagcacttatca 48  Q
    |||||| |||||||||||||||||||||||||||||    
T  12918024 atacatcatgaatttaacactttctagcacttatca 12917989  T

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