View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_high_108 (Length: 236)
Name: NF1836_high_108
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_108 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33329985 - 33330204
Alignment:
| Q |
1 |
aaagattaagagaaaagatctttgaaccaaattacatgttatttggtcattgaattctcttggaggtgaaagtatgaattgaattgccaggaacaagact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33329985 |
aaagattaagagaaaagatctttgaaccaacttacatgttatttggtcattgaattctcttggaggtgaaaatatgaattgaattgccaggaacaagact |
33330084 |
T |
|
| Q |
101 |
ggttgcatgatactatgagctagggggaatgaagcctggtccgagatcattctcaaggctactgtttacttgtgacgaatggtctcgaatcagacaccat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33330085 |
gattgcatgatactatgagctagggggaatgaagcctggtccgagatcattctcaaggctactgtttacttgtgacgaatggtctcgaatcagacaccat |
33330184 |
T |
|
| Q |
201 |
tcccctgaactccttcgtat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33330185 |
tcccctgaactccttcgtat |
33330204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University