View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_11 (Length: 615)
Name: NF1836_high_11
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 135 - 601
Target Start/End: Complemental strand, 10306414 - 10305948
Alignment:
| Q |
135 |
gagaacagtgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatataagtcacc-tttgcctcatgcg |
233 |
Q |
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| T |
10306414 |
gagaacaatgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatg--agtcaccctttgcctcatgcg |
10306317 |
T |
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| Q |
234 |
tgtggttggttttggtgtggatgagagcatttttgtatcttctgatttcattttgtaaacggagtatcaatcttcaatataatt-aatattcatatagta |
332 |
Q |
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| T |
10306316 |
tgtggttggttttggtgtgaatgagagcatttttgtatcttctgatttcattttgtaaacggagtattaatcttcaatataatttaatattcatatagta |
10306217 |
T |
|
| Q |
333 |
caaaaatgtaaatgcagtagtggtaatgttagtatttcacagtaatcggttattgtccttcgtcttctatgtttcatgaaacctctcaggtgtatagtgg |
432 |
Q |
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| T |
10306216 |
caaaaatgtaaatacagtagtactaatgttagtattttacagtaatcggttattgtccttcgtcttctatgtttcatgaaatctctcaggtgtatagtgg |
10306117 |
T |
|
| Q |
433 |
ttggaaatttattccattggagtaacatctctagcctcttaaaaggaccaaaccttgcattgttttataataatttggttttggtgatgatttttagatg |
532 |
Q |
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| T |
10306116 |
ttggaaatttattccattggagtaacatctctagcctcttaaaaggaccaaacctcgcattgttttataataatttggttttggtgatgatttttagatg |
10306017 |
T |
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| Q |
533 |
gcagcagctattgctgaggattgatgaaacagaagttctaatagactggtgccactttgtgatttgagt |
601 |
Q |
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| T |
10306016 |
gcagcagctattggtgaggattgatgaaacagaagttctaatagactggtgccactttgtgatttgagt |
10305948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10306521 - 10306411
Alignment:
| Q |
1 |
catgaaggtgatgaagagaatagcgagaatgatgagaatggtggagaatactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10306521 |
catgaaggtgatgaagagaatagcgagaatgatgagaatggtggagaatactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatg |
10306422 |
T |
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| Q |
101 |
gtggaatgaga |
111 |
Q |
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| T |
10306421 |
gtggaatgaga |
10306411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 1067198 - 1067165
Alignment:
| Q |
418 |
tcaggtgtatagtggttggaaatttattccattg |
451 |
Q |
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| T |
1067198 |
tcagatgtatagtggttggaaatttattccattg |
1067165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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