View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_127 (Length: 202)
Name: NF1836_high_127
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_127 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 44669316 - 44669151
Alignment:
| Q |
18 |
attgcaaagtgcaatctcatatcttatcctttaaaaccactgttggataacccatcaacccaccgtgtcgaacccgctaactttgaaatgatacacacca |
117 |
Q |
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| T |
44669316 |
attgcaaagtgcaatctcgtatcttatcctttaaaaccactgttggataacccatcagcccaccgtgttgaacccgctgactttgaaatgatacacacca |
44669217 |
T |
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| Q |
118 |
catcaatgacaatcataggttcatgcaatgggttgctttgtttgagtgatttctatcaatttactt |
183 |
Q |
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| T |
44669216 |
catcaatgacaatcataggttcatgcaatgggttgctttgtttgagtgatttctatcaatttactt |
44669151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 44688592 - 44688427
Alignment:
| Q |
18 |
attgcaaagtgcaatctcatatcttatcctttaaaaccactgttggataacccatcaacccaccgtgtcgaacccgctaactttgaaatgatacacacca |
117 |
Q |
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| T |
44688592 |
attgcaaagtgcaatctcgtatcttatcctttaaaaccactgttggataacccatcagcccaccgtgttgaacccgctgactttgaaatgatacacacca |
44688493 |
T |
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| Q |
118 |
catcaatgacaatcataggttcatgcaatgggttgctttgtttgagtgatttctatcaatttactt |
183 |
Q |
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| T |
44688492 |
catcaatgacaatcataggttcatgcaatgggttgctttgtttgagtgatttctatcaatttactt |
44688427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 44644174 - 44644131
Alignment:
| Q |
107 |
gatacacaccacatcaatgacaatcataggttcatgcaatgggt |
150 |
Q |
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| T |
44644174 |
gatacacaccacatcaatgacaatcataggttcatgcaatgggt |
44644131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 45096073 - 45096016
Alignment:
| Q |
18 |
attgcaaagtgcaatctcatatcttatcctttaaaaccactgttggataacccatcaa |
75 |
Q |
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| T |
45096073 |
attgcaaactgccatttcgtatcttatcctttaaaaccactgttggataacccatcaa |
45096016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 45096001 - 45095934
Alignment:
| Q |
87 |
gaacccgctaactttgaaatgatacacaccacatcaatgacaatcataggttcatgcaatgggttgctttgttt |
160 |
Q |
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| T |
45096001 |
gaacccgctagctttgaaacgagacacagcacgtcaat------cataggttcatgcaatgggttgctttgttt |
45095934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 45078224 - 45078195
Alignment:
| Q |
132 |
ataggttcatgcaatgggttgctttgtttg |
161 |
Q |
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| T |
45078224 |
ataggttcatgcaatgggttgctttgtttg |
45078195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 45089546 - 45089517
Alignment:
| Q |
132 |
ataggttcatgcaatgggttgctttgtttg |
161 |
Q |
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| T |
45089546 |
ataggttcatgcaatgggttgctttgtttg |
45089517 |
T |
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