View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_high_13 (Length: 576)
Name: NF1836_high_13
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 567
Target Start/End: Original strand, 43748061 - 43748612
Alignment:
| Q |
15 |
agataagactgctaatatttcaactcttggcaaaaaatcaaaatatgcaattgaaacttgaaatgtattggatgtagctccactgctccagatgcatgat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43748061 |
agataagactgctaatatttcaactcttggcaaaaaatcaaaatatgcaattgaaacttgaaatgtattggatgtagctc--------cagatgcatgat |
43748152 |
T |
|
| Q |
115 |
tgcaaaaaacttaggattcttcaagctcaaactaaatatacttgttcattgttattttatttctaaacattaataacaaactaacaatcctagttaaata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43748153 |
tgcaaaaaacttaggattcttcaagctcaaactaaatatacttgttcattgttattttatttctaaacattaataacaaactaacaatcctagttaaata |
43748252 |
T |
|
| Q |
215 |
taggaaaaagaaaggatcaaaagtttaccttcaagagagagagctcagaagccagtggaaactcnnnnnnncactagaaattaggagaagttaaggagca |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
43748253 |
taggaaaaagaaaggaccaaaagtttaccttcaagagagagagctcagaagccagtggaaactcaaaaaaacactagaaattatgagaagttaaggagca |
43748352 |
T |
|
| Q |
315 |
accctgtcaatggtggtaaatttcgtgagaataacaaaggaaatggatccactattgaaaagaatggcaagggaatcacaagtagcgggaatgcgactca |
414 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43748353 |
accctgtcaatgttagtaaatttcgtgagaataacaaaggaaatggatccactggtgaaaagaatggcaagggaatcacaagtagcgggaacgcgactca |
43748452 |
T |
|
| Q |
415 |
agttgcacaggtaataaatt-tagtcttgcacaacaaagaaacatgtcaaaaattatgaacttgtgttgaacttgag------tatgtttgtcaaacttt |
507 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43748453 |
agttgcacaggtaataaattgtagtcttgcacaacaaagaaacatgtcaaaaattatgaacttgtgttgaacttgagtatatatatgtttgtcaaacttt |
43748552 |
T |
|
| Q |
508 |
ttgttgcagatactcataaggtttccaaatggagaaagaagagaacatactttcctatgc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43748553 |
ttgttgcagatactcataaggtttccaaatggagaaagaagagaacatactttcctatgc |
43748612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University