View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_2 (Length: 786)

Name: NF1836_high_2
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_2
NF1836_high_2
[»] chr5 (1 HSPs)
chr5 (10-769)||(14527597-14528354)


Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 10 - 769
Target Start/End: Original strand, 14527597 - 14528354
Alignment:
Q  10 attattctaggatgtaggttcatgcattgagaaaaattaacaaacctagtagtgataaatcttgagtatgaatccaatttgttgacttgtacaggtaatg 109  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14527597 attatgctaggatgtagcttcatgcattgagaaaaattaacaaacctagtagtgataaatcttgagtatgaatccaatttgttgacttgtacaggtaatg 14527696  T
Q  110 tagtagtgatagtcgttgcagtagttagttcggtgatcgttgtggtggttgccgtaacttttggagcttatatctggaaacagagatacattcaaaagaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14527697 tagtagtgatagtcgttgcagtagttagttcggtgatcgttgtggtggttgccgtaacttttggagcttatatctggaaacagagatacattcaaaagaa 14527796  T
Q  210 aagaagaggtataagatttaatagcttatctctatatttgttaataataatagcaaacctagaatatcacaccatttatatcatcatagtaagaaattct 309  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14527797 aagaagaggtataagatttaatagcttatctctat--ttgttaataataatagcaaacctagaatatcacaccatttatatcatcatagtaagaaattct 14527894  T
Q  310 gttttttcttttcaaagtgatacaacttatcttgcaaacaaattgtggaatcgttagcagttataacacaactacattgagaaactttactgatccaaat 409  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14527895 gttttttcttttcaaagtgctacaatttatcttgcaaacaaattgtggaatcgttagcagttataacacaactacattgagaaactttactgatccaaat 14527994  T
Q  410 ggtcgtcctggttgcctggatcaaatgatgcagaaaagttagcaaagagtctagagcaaaaaagcttgaacttcaagtactctacattggaaaaagctac 509  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  14527995 ggtcgtcctggttgccaggatcaaatgatgcagaaaagttagcaaagagtctagagcaaaaaagcttgaacttcaagtacaatacattggaaaaagctac 14528094  T
Q  510 tggatcttttaatgacaatagcaaactagggcatggaggattcggaacggtttataaagtatttctctaatcttaagacctataaataaccacacatttt 609  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14528095 tggatcttttaatgacaatagaaaaatagggcatggaggattcggaacggtttataaagtatttctcttatcttaagacctataaataaccacacatttt 14528194  T
Q  610 acatatcaagcagattaacagtttggttgctgcagggagttctaccagatggaagagagattgctattaagaggttatatttcaacaacagacatagagc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  14528195 acatatcaagcagattaacagtttggttgctgcagggagttctaccagatggaagagagattgctatcaagaggttatttttcaacaacagacatagagc 14528294  T
Q  710 agcagatttctataacgaagtcgacataattagcggtgtcgaacacaagaatctagttag 769  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14528295 agcagatttctctaacgaagtcgacataattagcggtgtcgaacacaagaatctagttag 14528354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University