View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_28 (Length: 473)
Name: NF1836_high_28
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 33919433 - 33919185
Alignment:
| Q |
8 |
taggtcaaggaaccatcataggtgtcatagacacgggtactaactaataatcctcttacaaatatccaaccaagcatttgaaaatgaaaatgaaaatg-- |
105 |
Q |
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| T |
33919433 |
taggtcaaggaaccatcataggcgtcatagacacgggtactaactaataatcctcttacaaatatccaaccaagcatttgaaaatgaaaatgaaaatgaa |
33919334 |
T |
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| Q |
106 |
----gatctcatgcgttcatgcagtcaacaatccggtgtcatccaactaagatcagaagactccaatttcaatctagttttttaaatatttgtaaacgag |
201 |
Q |
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| T |
33919333 |
aatggatctcatgcgttcatgcagtcaacaatccggtgtcatccaattaagatcagaatgctccaatttcaatctaggtttttaaatatttgtaaacgag |
33919234 |
T |
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| Q |
202 |
cttaaaatctgagttgtccgatgaaaattggatggtgctatgctaattg |
250 |
Q |
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| T |
33919233 |
cttaaaatctgagttgtccgatgaaaattggatggtgctatgctaattg |
33919185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 292 - 459
Target Start/End: Complemental strand, 33919187 - 33919020
Alignment:
| Q |
292 |
ttgcaataagggatcccatgcattcgtgctgccagcaatttggtaccgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaa |
391 |
Q |
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| T |
33919187 |
ttgcaataagggatcccatgcattcatgctgccagcaatttggtaccgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaa |
33919088 |
T |
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| Q |
392 |
aatgcgatttacctaggttaaaatatgtgttgcctgatgaaaattggacggtgaagatctgctaattg |
459 |
Q |
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| T |
33919087 |
aatgcgatttacctaggttaaaatatgagttgcctgatgaaaattggacggtgaagatctgctaattg |
33919020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 35081954 - 35082396
Alignment:
| Q |
8 |
taggtcaaggaaccatcataggtgtcatagacacgggtactaactaataatcctcttacaaatatccaacca-agcatttgaaaatgaaaatgaaaatgg |
106 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||| ||||||| |||||||||||||||||| | |
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| T |
35081954 |
taggtcaaggaaccatcataggcgtcatagacacaggtactaatcaat---cctcttacaaataaccaaccagagcatttgaaaatgaaaaca------g |
35082044 |
T |
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| Q |
107 |
atctcatgcgttcatgcagtcaacaatccggtgtcatccaactaagatcagaagactccaatttcaatctagttttttaaatatttgtaaac-------- |
198 |
Q |
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| T |
35082045 |
atatcatgcattcatgcagtcagcaaatcggcattgtccgattaagatcagaaagctcagatttcaagctagttttt-aaatatttgtaaacacgattta |
35082143 |
T |
|
| Q |
199 |
-gagcttaaaatctgagttgtccgatgaaaattggatggtgctatgctaattggaaagtgcagatatccaaccaaacactagaaaacgag------tttc |
291 |
Q |
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| T |
35082144 |
cgagcttaaaatctgagtcgtccaatgaaaatcggatggtgcta-----attggacagtgcagatatccaaccaaacactagaaaatgaaaatggatttc |
35082238 |
T |
|
| Q |
292 |
ttgcaataagggatcccatgcattcgtgctgccagcaatttggtaccgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaa |
391 |
Q |
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||||||||||||||| |||||||| ||||| |||||| |||||||| ||| |||||||| ||| | |||| ||| ||||||||||| |||||||| | |
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| T |
35082239 |
ttgcaataagggatcagatgcattcatgctgtcagcaacttggtaccttccaattaagatcaaacaattcagatttcgaacaagttttt-aatattttta |
35082337 |
T |
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| Q |
392 |
aatgcgatttacctaggttaaaatatgtgttgcctgatgaaaattggacggtgaagatc |
450 |
Q |
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|||| |||||||| ||||||||||| | |||| | |||||||||||| |||||||||| |
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| T |
35082338 |
aatgtgatttaccgaggttaaaataagagttgtccaatgaaaattggatggtgaagatc |
35082396 |
T |
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