View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_31 (Length: 461)

Name: NF1836_high_31
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_31
NF1836_high_31
[»] chr2 (16 HSPs)
chr2 (47-440)||(89667-90059)
chr2 (47-358)||(19678403-19678712)
chr2 (47-351)||(45276926-45277230)
chr2 (47-340)||(7879794-7880087)
chr2 (47-351)||(2565973-2566275)
chr2 (47-343)||(18780605-18780899)
chr2 (47-352)||(29303543-29303844)
chr2 (51-351)||(6271037-6271330)
chr2 (88-196)||(31548766-31548874)
chr2 (88-146)||(44322176-44322234)
chr2 (119-196)||(6883758-6883835)
chr2 (88-131)||(27861790-27861833)
chr2 (88-146)||(6221478-6221536)
chr2 (88-146)||(33015147-33015205)
chr2 (88-146)||(44313997-44314055)
chr2 (139-196)||(38565971-38566028)
[»] chr5 (17 HSPs)
chr5 (47-351)||(14651166-14651468)
chr5 (51-349)||(38491417-38491716)
chr5 (47-351)||(7850681-7850978)
chr5 (88-193)||(29150689-29150794)
chr5 (87-183)||(5120417-5120513)
chr5 (85-196)||(43170925-43171036)
chr5 (88-193)||(13820518-13820623)
chr5 (88-146)||(18889160-18889218)
chr5 (88-193)||(5578515-5578620)
chr5 (88-193)||(13490482-13490587)
chr5 (143-196)||(21491705-21491758)
chr5 (90-193)||(13825865-13825966)
chr5 (88-192)||(39537307-39537411)
chr5 (88-146)||(2677056-2677114)
chr5 (88-146)||(23962942-23963000)
chr5 (118-196)||(37135207-37135285)
chr5 (352-427)||(41951652-41951729)
[»] chr6 (17 HSPs)
chr6 (47-351)||(14678103-14678407)
chr6 (47-348)||(33516053-33516354)
chr6 (89-183)||(13758502-13758596)
chr6 (85-193)||(15603684-15603792)
chr6 (118-193)||(15060265-15060340)
chr6 (88-193)||(18675445-18675550)
chr6 (121-165)||(12269527-12269571)
chr6 (88-146)||(22012070-22012128)
chr6 (135-196)||(22525010-22525071)
chr6 (85-157)||(1831228-1831300)
chr6 (88-192)||(20990531-20990635)
chr6 (92-183)||(26817715-26817806)
chr6 (88-146)||(1603461-1603519)
chr6 (88-146)||(34043636-34043694)
chr6 (92-193)||(1423051-1423152)
chr6 (143-196)||(4064847-4064900)
chr6 (159-196)||(31474264-31474301)
[»] chr7 (22 HSPs)
chr7 (47-351)||(19311379-19311670)
chr7 (47-351)||(8069949-8070251)
chr7 (47-343)||(48238825-48239120)
chr7 (47-351)||(6188831-6189131)
chr7 (47-351)||(6195347-6195647)
chr7 (50-352)||(48637072-48637360)
chr7 (94-192)||(135756-135854)
chr7 (87-196)||(14574176-14574285)
chr7 (87-196)||(21863950-21864059)
chr7 (94-196)||(30082142-30082244)
chr7 (89-157)||(23305736-23305804)
chr7 (88-183)||(18667460-18667555)
chr7 (88-146)||(4539953-4540011)
chr7 (85-183)||(24441578-24441676)
chr7 (87-183)||(39038164-39038257)
chr7 (143-196)||(15995395-15995448)
chr7 (240-352)||(30081982-30082096)
chr7 (88-192)||(13754207-13754311)
chr7 (240-318)||(135904-135982)
chr7 (85-195)||(8113410-8113519)
chr7 (155-196)||(12380188-12380229)
chr7 (251-351)||(23305904-23306002)
[»] chr3 (14 HSPs)
chr3 (47-352)||(31884381-31884684)
chr3 (47-351)||(6024178-6024480)
chr3 (51-351)||(23044327-23044620)
chr3 (96-194)||(6584073-6584171)
chr3 (91-183)||(33100347-33100439)
chr3 (85-196)||(47185439-47185550)
chr3 (85-194)||(44879908-44880017)
chr3 (88-192)||(52448235-52448339)
chr3 (88-146)||(10994103-10994161)
chr3 (88-146)||(19157185-19157243)
chr3 (88-146)||(27941470-27941528)
chr3 (143-196)||(9467144-9467197)
chr3 (159-196)||(22918066-22918103)
chr3 (159-196)||(36641630-36641667)
[»] chr4 (17 HSPs)
chr4 (47-351)||(28142872-28143175)
chr4 (47-351)||(14191738-14192040)
chr4 (47-351)||(51338018-51338314)
chr4 (88-193)||(31915560-31915665)
chr4 (87-183)||(10142608-10142704)
chr4 (88-155)||(52460633-52460700)
chr4 (386-429)||(55851911-55851954)
chr4 (120-193)||(3665055-3665128)
chr4 (120-196)||(25201790-25201866)
chr4 (88-131)||(52459376-52459419)
chr4 (88-146)||(7413698-7413756)
chr4 (88-146)||(7459779-7459837)
chr4 (88-146)||(10094976-10095034)
chr4 (93-183)||(24611006-24611094)
chr4 (88-146)||(28803848-28803906)
chr4 (85-196)||(13957711-13957820)
chr4 (84-128)||(42511313-42511357)
[»] scaffold0743 (1 HSPs)
scaffold0743 (47-343)||(2240-2536)
[»] chr8 (12 HSPs)
chr8 (47-351)||(6926981-6927285)
chr8 (47-351)||(28516834-28517138)
chr8 (47-351)||(11994156-11994442)
chr8 (47-348)||(2878632-2878932)
chr8 (47-152)||(28509627-28509732)
chr8 (95-192)||(2807593-2807690)
chr8 (85-183)||(9381757-9381855)
chr8 (85-196)||(11648016-11648127)
chr8 (92-192)||(16729826-16729926)
chr8 (88-131)||(1981688-1981731)
chr8 (88-146)||(45117558-45117616)
chr8 (148-196)||(24683281-24683329)
[»] chr1 (16 HSPs)
chr1 (47-351)||(28945236-28945539)
chr1 (47-352)||(26222062-26222365)
chr1 (47-343)||(36297069-36297358)
chr1 (50-351)||(42722607-42722894)
chr1 (88-193)||(44310740-44310845)
chr1 (352-431)||(20226739-20226818)
chr1 (88-193)||(17967230-17967336)
chr1 (352-426)||(18705630-18705706)
chr1 (88-146)||(5049547-5049605)
chr1 (88-146)||(21906471-21906529)
chr1 (88-146)||(22070595-22070653)
chr1 (89-146)||(48596306-48596363)
chr1 (352-435)||(9908095-9908179)
chr1 (84-192)||(12028218-12028326)
chr1 (120-196)||(42055719-42055795)
chr1 (84-128)||(49228288-49228332)
[»] scaffold0385 (1 HSPs)
scaffold0385 (93-183)||(1065-1155)
[»] scaffold1364 (1 HSPs)
scaffold1364 (87-196)||(1198-1307)
[»] scaffold1266 (1 HSPs)
scaffold1266 (87-196)||(1664-1773)
[»] scaffold0263 (1 HSPs)
scaffold0263 (87-196)||(18245-18354)
[»] scaffold0065 (1 HSPs)
scaffold0065 (143-196)||(66682-66735)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 47 - 440
Target Start/End: Complemental strand, 90059 - 89667
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  90059 ttactatcattagatgtcacaaattcactgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 89960  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||        |||||||    
T  89959 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctaaaaaaa-ccttttatcctatagtgaaaagcgaagaaaaaaaatgaagcg 89861  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  89860 ttagtaaaatcataacaagaaactaaaaaatgttttgatgtattacataagggcccattttttcaaactatgtctaaagcccctgaaacactaggaacgg 89761  T
Q  347 ccctgggtatcagaactaatttggtacccgctttgaaggattttccgctgcactttttagagaaaatccaattttctcatcttcattttcttga 440  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  89760 ccatgggtatcagaactaatttggtacccgctttgaaggatcttccgctgcactttttagagaaaatccaattttctcatcttcattttcttga 89667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 47 - 358
Target Start/End: Original strand, 19678403 - 19678712
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||    
T  19678403 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtttgcttcggagaagctattgttctctaatcctatggtatttt 19678502  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||         |||||||| |||||||||||||||||          |||||    
T  19678503 gtttagttttggtttctatggagtatttgatttatttgaagatgttgtctaaaaaa---cttttatcttatagtgaaaagcgaaggaaaaaaaaatgaag 19678599  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||| ||||||||||||||||| |||| |||||| ||||||||| ||     
T  19678600 cgttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggctcattttttcaaactatgcctaaggccccttaaacgctagaaac 19678698  T
Q  345 ggccctgggtatca 358  Q
    |||||||| |||||    
T  19678699 ggccctggttatca 19678712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 45277230 - 45276926
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  45277230 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 45277131  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||| ||         |||||||| |||||||||||||||||          || ||    
T  45277130 gtttagttttggtttctatgaagtatttgatttatttgaagatgttgtctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatgtag 45277033  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||||||||||||||||||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||     
T  45277032 cgttagtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaac 45276933  T
Q  345 ggccctg 351  Q
    |||||||    
T  45276932 ggccctg 45276926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 47 - 340
Target Start/End: Complemental strand, 7880087 - 7879794
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  7880087 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 7879988  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||          || ||    
T  7879987 gtttagttttggtttctatgaagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatgtag 7879890  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctag 340  Q
    ||||||||||||||||||||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||| |||| |||||| |||||||||    
T  7879889 cgttagtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctag 7879794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 2565973 - 2566275
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||    
T  2565973 ttactatcattagatgtcaaaaattcagtgtctattatttaagtgctaaaatttcagtttatttcgcagaagcaattgttctctaatcctatggtatgtt 2566072  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  2566073 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcttatagtgaaaagcgaagaaaaaaaattaagtg 2566170  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||| |||||||||||| || ||||  ||||  |||||| |||||||||||||||||| |||| |||| | |||||||||||| ||    
T  2566171 ttagtaaaatcataacaaaaaactaaaaaagtttatgatatattatgtaagggtccattttttcaaactatgcctaaggcccttaaaacgctaggaacgg 2566270  T
Q  347 ccctg 351  Q
    |||||    
T  2566271 ccctg 2566275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 47 - 343
Target Start/End: Complemental strand, 18780899 - 18780605
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||    
T  18780899 ttactatcattagatgtcaaaaattcagtgtctaatatttaagtgctaaaatttcagtttatttcgcagaagcaattgttctctaatcctatggtatatt 18780800  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  18780799 gtttagttttgatttctaaggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcttatagtgaaaagcgaagaaaaaaaattaagtg 18780702  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaa 343  Q
    |||||||||||||||||| |||||||||||| || ||||  ||||  ||||||||||||||||||||||||| |||| |||| | ||||||||||||    
T  18780701 ttagtaaaatcataacaaaaaactaaaaaagtttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaa 18780605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 47 - 352
Target Start/End: Original strand, 29303543 - 29303844
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29303543 ttactatcattagatctca-aaattcagtgtctactatttaggtgttaaaatttcagtctacttcggataagctattgttctctaatcctatggtatttt 29303641  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||||         |||||||| |||||||||||||||||          |||||    
T  29303642 gtttagttttggtttctatggagtttttgatttatttgaagatgttgcctaaaaaag--cttttatcgtatagtgaaaagcgaagaaaaaaaaaatgaag 29303739  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||| |||||||||||||||||||||||||| ||| ||||| ||||  ||||||||| |||| |||||||||| |||| |||||| ||||||||||||     
T  29303740 cgtta-taaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggccc-ttttgtcaaactatgcctaaggccccttaaacgctaggaac 29303836  T
Q  345 ggccctgg 352  Q
    ||||||||    
T  29303837 ggccctgg 29303844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 51 - 351
Target Start/End: Complemental strand, 6271330 - 6271037
Alignment:
Q  51 tatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgttt 150  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||     | |  | | ||  |||||||    
T  6271330 tatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgt-----atttgtttagt--tttgttt 6271238  T
Q  151 agttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnn--tgaagcgtt 248  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||          |||||||||    
T  6271237 agttttggtttctatggagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaagaaaatgaagcgtt 6271140  T
Q  249 agtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatggcc 348  Q
    ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||| ||||||| |||| |||||| |||| |||| || ||||    
T  6271139 agtaaaatcataacaagaaactaaaaaagtttatgatgtattatataagggcccattttttcgaactatgcctaaggccccttaaacactagaaacggcc 6271040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 31548874 - 31548766
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    |||| ||||||||||||||||||||||   |||||||||||||| | ||||| |||||| ||| |||||| | | |||  ||||||||||||||||  |     
T  31548874 ggtggtaaaatttcagtctacttcgcaagtgctattgttctctacttctatgatattttattttgttttggtgtttataaagtatttgatttattttcat 31548775  T
Q  188 atgttgcct 196  Q
    |||||||||    
T  31548774 atgttgcct 31548766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 44322234 - 44322176
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||| |||||| ||||||| | ||| ||||||||    
T  44322234 ggtgctaaaatttcagtctacttcacatatgctatttttctctacttctacggtatttt 44322176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 6883758 - 6883835
Alignment:
Q  119 ctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||||||||| | ||| | ||| || ||| |||||| | |||||||||||||||||||||||  |||||||||||    
T  6883758 ctattgttctctacttctacgatatcttattttgttttggtgtctatggagtatttgatttattttcagatgttgcct 6883835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 27861833 - 27861790
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctcta 131  Q
    ||||||||||||||||||||||||||||  |||||| |||||||    
T  27861833 ggtgctaaaatttcagtctacttcgcatgtgctatttttctcta 27861790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 6221478 - 6221536
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  6221478 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 6221536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 33015205 - 33015147
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  33015205 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 33015147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 44314055 - 44313997
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  44314055 ggtgctaaaatttcagtctacttcacatttgctatttttctctacttctacggtatttt 44313997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 38566028 - 38565971
Alignment:
Q  139 ggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||||| |||||| | |||||  ||||||||||||||||  |||||||||||    
T  38566028 ggtattttgttttgttttggtgtctataaagtatttgatttattttcagatgttgcct 38565971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 14651468 - 14651166
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14651468 ttactatcattagatgtcacaaattcactgtctactatttaggtgctaaaatttcagtctactttgcataagctattgttctctaatcctatggtatttt 14651369  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||        |||||||    
T  14651368 gtttagttttgatttatatggattatttgatttatttaaagatgttgcct-aaaaaaaccttttatcctatagtgaaaagcgaagaaaaaaaatgaagcg 14651270  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||| | ||| |||||||||||||||||||||||||||||||||||| || ||    
T  14651269 ttagtaaaatcataacaagaaactaaaaaatgttttgatgtattgcataagagtcca-tttttcaaactatgtctaaagcccctgaaacgctagaaacgg 14651171  T
Q  347 ccctg 351  Q
    |||||    
T  14651170 ccctg 14651166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 51 - 349
Target Start/End: Original strand, 38491417 - 38491716
Alignment:
Q  51 tatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgttt 150  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  38491417 tatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcgaagaagctattgttctctaatcctatagtattttgttt 38491516  T
Q  151 agttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaagcgtt 248  Q
    ||||||| |||||||| |||||||||||||||| |||||||| |||         |||||||| |||||||||||||||||          || ||||||    
T  38491517 agttttggtttctatgaagtatttgatttatttgaagatgttacctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatgtagcgtt 38491614  T
Q  249 agtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggccca-ttttttcaaactatgtctaaagcccctgaaacgctaggaatggc 347  Q
    ||||||||||||||||||||||||||||  || ||||  ||||  |||||||||| ||||||||||||||| |||| |||||| |||||||||||| |||    
T  38491615 agtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccatttttttcaaactatgcctaaggccccttaaacgctaggaacggc 38491714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 7850681 - 7850978
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| | ||||||||||      ||| | |    ||||    
T  7850681 ttactatcattagatgtcaaaaattcagtgtctattatttaggtgctaaaatttcagtctacttcggagaagctattgt------atc-tgtttagtttt 7850773  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnn--tgaag 244  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||         || ||||| |||||||||||||||||          |||||    
T  7850774 gtttagttttggtttctatggagtatatgatttatttgaagatgttgcctaaaaaag--ctgttatcttatagtgaaaagcgaaggaaaagaaaatgaag 7850871  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||| ||||||| |||| |||||| |||| |||||||     
T  7850872 cgttagtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaac 7850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 29150689 - 29150794
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    |||||||||||||||||||||||||||   | ||||| |||||| |  || |||||||| ||| |||||| | |||||| ||||||||||||||||  ||    
T  29150689 ggtgctaaaatttcagtctacttcgcaagtgttattgctctctacttttacggtattttattttgttttggtatctatgaagtatttgatttatttttag 29150788  T
Q  188 atgttg 193  Q
    ||||||    
T  29150789 atgttg 29150794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 5120513 - 5120417
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||| |||||||||||||||||| | ||| ||||||||||| || | ||| |||||||| ||| |||||| | | ||||||||||| |||||||||    
T  5120513 aggtgttaaaatttcagtctactttgtatatgctattgttctatacttctacggtattttattttgttttggtgtttatggagtattggatttattt 5120417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 43171036 - 43170925
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    ||||||||||||||| |||||||||||||||  ||||||||||  |  | ||| | |||||| ||| |||||| | ||||  |||||||||||||||||     
T  43171036 ttaggtgctaaaattacagtctacttcgcatgtgctattgttccatgcttctacgatattttattttgttttggtgtctaaagagtatttgatttatttt 43170937  T
Q  185 aagatgttgcct 196  Q
     |||||||||||    
T  43170936 cagatgttgcct 43170925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 13820623 - 13820518
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    |||||||||||||||||||||||| |||  | | |||||||||| | ||| |||||||| ||| |||||| | ||||||  ||||||||||| |||  ||    
T  13820623 ggtgctaaaatttcagtctacttcacatgtgttgttgttctctacttctacggtattttattttgttttggtgtctatgaggtatttgatttgttttcag 13820524  T
Q  188 atgttg 193  Q
    ||||||    
T  13820523 atgttg 13820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 18889160 - 18889218
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||||||| || |||| ||||||| | ||| ||||||||    
T  18889160 ggtgctaaaatttcagtctacttcgcatgagttatttttctctacttctacggtatttt 18889218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 5578620 - 5578515
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||| |  || | |||||| ||| |||||| | |  || |||||||| ||||||||  ||    
T  5578620 ggtgctaaaatttcagtctactttgcatatgctatttttctctacttttacgatattttattttgttttggtgtacatagagtatttaatttattttcag 5578521  T
Q  188 atgttg 193  Q
    ||||||    
T  5578520 atgttg 5578515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 13490482 - 13490587
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||||||||  |||||| |||| || | ||| |  ||||| ||| |||||| | | ||| |||||||| ||||||||  ||    
T  13490482 ggtgctaaaatttcagtctacttcgcatgtgctatttttctatacttctacgacattttattttgttttggtgtatatagagtatttaatttattttcag 13490581  T
Q  188 atgttg 193  Q
    ||||||    
T  13490582 atgttg 13490587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 21491758 - 21491705
Alignment:
Q  143 ttttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||| |||||| ||||||| ||||||||||||||||| || |||||||||    
T  21491758 ttttgttttgttttggtttctattgagtatttgatttattttaaaatgttgcct 21491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 13825966 - 13825865
Alignment:
Q  90 tgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagat 189  Q
    ||||||||||||||||||||| ||||  | |||||||||||| |  || |||||||||||| |||||  | | | || ||||||||||||||||  ||||    
T  13825966 tgctaaaatttcagtctactttgcatgtgttattgttctctacttttacggtattttgttttgtttt--tgtgtctgtagtatttgatttatttttagat 13825869  T
Q  190 gttg 193  Q
    ||||    
T  13825868 gttg 13825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 39537411 - 39537307
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||| ||||||||||  |||||| ||||||| | ||| | |||||| ||| |||||| | | ||| || ||||| ||||||||  ||    
T  39537411 ggtgctaaaatttcagtttacttcgcatgtgctatttttctctacttctaagatattttattttgttttggtgtatatagaatatttaatttattttcag 39537312  T
Q  188 atgtt 192  Q
    |||||    
T  39537311 atgtt 39537307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 2677056 - 2677114
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  2677056 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 2677114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 23962942 - 23963000
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  23962942 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 23963000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 37135207 - 37135285
Alignment:
Q  118 gctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||||||| | ||| | |||||| | | |||||| | |||||||||||||||||||||||  ||| |||||||    
T  37135207 gctattgttctctacttctaagatattttatgttgttttggtgtctatggagtatttgatttattttcagacgttgcct 37135285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 427
Target Start/End: Complemental strand, 41951729 - 41951652
Alignment:
Q  352 ggtatcagaactaatttggtacccgctttgaaggat--tttccgctgcactttttagagaaaatccaattttctcatc 427  Q
    ||||| ||| ||||| ||||| |||| |||||||||  ||||||||||| ||| | ||||||||| ||||||||||||    
T  41951729 ggtattagagctaatctggtatccgccttgaaggatattttccgctgcattttctcgagaaaatctaattttctcatc 41951652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 14678103 - 14678407
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14678103 ttactatcattagatgtcacaaattcactgcctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcttatggtatttt 14678202  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag-nnnnnnnntgaagc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||| ||||         ||||||    
T  14678203 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcct-aagaaaaccttttatcttatagtgaaaagtgaagaaaaaaaaatgaagc 14678301  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||  |||||| ||||||||| ||||||| ||||| ||||||||||||||||||| |    
T  14678302 gttagtaaaatcataaaaagaaactaaaaaaggttttgatgtattatgtaagggtccatttttttaaactatatctaaggcccctgaaacgctaggaacg 14678401  T
Q  346 gccctg 351  Q
    ||||||    
T  14678402 gccctg 14678407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 47 - 348
Target Start/End: Complemental strand, 33516354 - 33516053
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  33516354 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 33516255  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||          |  ||    
T  33516254 gtttagttttggtttctatgaagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatatag 33516157  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||||||||||||||||||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||| |||| |||||| ||||| ||||||     
T  33516156 cgttagtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgttaggaac 33516057  T
Q  345 ggcc 348  Q
    ||||    
T  33516056 ggcc 33516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 13758596 - 13758502
Alignment:
Q  89 gtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||||||| |||||||||| |||  |||||||||||||| | ||| |||||||| ||  |||||| | ||||| |||||||||||||||||    
T  13758596 gtgctaaaattttagtctacttcacatgtgctattgttctctacttctacggtattttattctgttttggtgtctatagagtatttgatttattt 13758502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 15603792 - 15603684
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    |||||||||||||||||| | ||||| |||   |||||||||||||| | ||||| |||||| ||| ||||| || | |||| ||||||||||||||||     
T  15603792 ttaggtgctaaaatttcaatttactttgcaggtgctattgttctctacttctatgatattttattttgttttaatgtttatgaagtatttgatttatttt 15603693  T
Q  185 aagatgttg 193  Q
     ||||||||    
T  15603692 cagatgttg 15603684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 15060265 - 15060340
Alignment:
Q  118 gctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttg 193  Q
    |||||||||||||| | |||||||||||| ||| |||||| | ||||| |||||||||||||||||  ||||||||    
T  15060265 gctattgttctctacttctatggtattttattttgttttggtgtctatagagtatttgatttattttcagatgttg 15060340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 18675445 - 18675550
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||||||||  | |||| ||||||| ||||  | |||||| ||| |||||| | | ||| |||||||| ||||||||  ||    
T  18675445 ggtgctaaaatttcagtctacttcgcatgtgttatttttctctactcctgcgatattttattttgttttggtgtatatagagtatttaatttattttcag 18675544  T
Q  188 atgttg 193  Q
    ||||||    
T  18675545 atgttg 18675550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 12269527 - 12269571
Alignment:
Q  121 attgttctctaatcctatggtattttgtttagttttgatttctat 165  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  12269527 attgttctcttattctatggtattttgtttagttttgatttctat 12269571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 22012128 - 22012070
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||| |||||| ||||||| | ||| ||||||||    
T  22012128 ggtgctaaaatttcagtctacttcacatatgctatttttctctacttctacggtatttt 22012070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 22525010 - 22525071
Alignment:
Q  135 ctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||||| ||| |||||||| |||||  ||||||||||||||||  |||||||||||    
T  22525010 ctatggtattttattttgttttgatgtctataaagtatttgatttattttcagatgttgcct 22525071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 1831228 - 1831300
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttg 157  Q
    |||| ||||||||||||||||||||||||| | | |||||||||||| | ||  |||||||| ||| ||||||    
T  1831228 ttagatgctaaaatttcagtctacttcgcagatgttattgttctctacttctgcggtattttattttgttttg 1831300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 20990531 - 20990635
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| |  || | |||||  ||| |||||| | | ||| |||||||| ||||||||  ||    
T  20990531 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttattttcag 20990630  T
Q  188 atgtt 192  Q
    |||||    
T  20990631 atgtt 20990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 26817715 - 26817806
Alignment:
Q  92 ctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||||||||| ||||||||||||  |||||||||||||| | ||| | |||||| ||| ||||   | |||||  ||||||||||||||||    
T  26817715 ctaaaatttcactctacttcgcatgtgctattgttctctacttctacgatattttattttgtttgagtgtctatacagtatttgatttattt 26817806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 1603461 - 1603519
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  1603461 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 1603519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 34043636 - 34043694
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  34043636 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 34043694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 1423051 - 1423152
Alignment:
Q  92 ctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgt 191  Q
    |||||||||||||||| ||| |||  | |||| ||||||| ||||| | |||||| ||| |||||| | | ||| |||||||| ||||||||  ||||||    
T  1423051 ctaaaatttcagtctagttctcatgtgttatttttctctactcctacgatattttattttgttttggtgtatatagagtatttaatttattttcagatgt 1423150  T
Q  192 tg 193  Q
    ||    
T  1423151 tg 1423152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4064900 - 4064847
Alignment:
Q  143 ttttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||| |||| | ||||||| ||||||||||||||||| | ||||||||||    
T  4064900 ttttgttttgtttcggtttctattgagtatttgatttattttacgatgttgcct 4064847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 31474301 - 31474264
Alignment:
Q  159 tttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  31474301 tttctattgagtatctgatttatttaaagatgttgcct 31474264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 19311670 - 19311379
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19311670 ttactatcattagatgtcacaaattcactgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctattcctatggtatttt 19311571  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag-nnnnnnnntgaagc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||         ||||||    
T  19311570 gtttagttttgatttctatggagtatttgatttatttaaagatattgcct-aaaaaaaccttttatcctatagtgaaaagcgaagaaaaaaaaatgaagc 19311472  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    |||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  19311471 gttagtaaaatcataacaagaaactaaaaaaggtt-------------taagggcccattttttcaaactatgtctaaggcccctgaaacgctaggaacg 19311385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 8069949 - 8070251
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  8069949 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtttacttcggagaagctattgttctctaatcctatggtatttt 8070048  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag-nnnnnnnntgaagc 245  Q
     |||||||||| ||||||||||||||||||||||||| ||||||||||||         |||||||| ||| |||||||||||||         ||||||    
T  8070049 atttagttttggtttctatggagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatggtgaaaagcgaagaaaagaaaatgaagc 8070146  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  8070147 gttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaatg 8070245  T
Q  346 gccctg 351  Q
    ||||||    
T  8070246 gccctg 8070251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 47 - 343
Target Start/End: Original strand, 48238825 - 48239120
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  48238825 ttactatcattagatgtcaaaaattcagtgtcaactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatgatatttt 48238924  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaa-gnnnnnnnntgaagc 245  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||         |||||||| ||||||||||||| || |        ||||||    
T  48238925 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagccaaggaaaaaaaatgaagc 48239022  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaa 343  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  48239023 gttagtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaa 48239120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 6189131 - 6188831
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||    
T  6189131 ttactatcattagatgtcaaaaattcagtgtcgattatttaggtgctaaaatttcagtttacttcggagaagctgttgttctctaatcctatggtatttt 6189032  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||        |||||||    
T  6189031 gtttagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaag-aaaaaaatgaagcg 6188935  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||||||||||||||| |||| |||||| |||||||||||| ||    
T  6188934 ttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacgg 6188836  T
Q  347 ccctg 351  Q
    |||||    
T  6188835 ccctg 6188831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 6195647 - 6195347
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||    
T  6195647 ttactatcattagatgtcaaaaattcagtgtcgattatttaggtgctaaaatttcagtttacttcggagaagctgttgttctctaatcctatggtatttt 6195548  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||        |||||||    
T  6195547 gtttagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaag-aaaaaaatgaagcg 6195451  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||||||||||||||| |||| |||||| |||||||||||| ||    
T  6195450 ttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacgg 6195352  T
Q  347 ccctg 351  Q
    |||||    
T  6195351 ccctg 6195347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 50 - 352
Target Start/End: Original strand, 48637072 - 48637360
Alignment:
Q  50 ctatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtt 149  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||      ||| | |    |||||||    
T  48637072 ctatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgt------atc-tgtttagttttgtt 48637164  T
Q  150 tagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcgtta 249  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||           |||||||    
T  48637165 tagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaag-----agcgtta 48637257  T
Q  250 gtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatggccc 349  Q
    |||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||| ||||||| |||| |||||| |||| ||||||| |||||    
T  48637258 gtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggccc 48637357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 135756 - 135854
Alignment:
Q  94 aaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgtt 192  Q
    |||||||||||||||||| ||  ||| |||||||||||||  ||| ||||||||||| |||||| |||||||||||||||| |||||||| ||||||||    
T  135756 aaaatttcagtctacttcacaggagcaattgttctctaattgtatcgtattttgttttgttttggtttctatggagtatttaatttatttgaagatgtt 135854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 14574176 - 14574285
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    |||||||||||||||||||||||||||||   |||||||||| |  | ||  | | |||||||| |||||||||||||| ||||||||||||||||| ||    
T  14574176 aggtgctaaaatttcagtctacttcgcatgttctattgttctatgcttctgcgattttttgttttgttttgatttctattgagtatttgatttattttaa 14574275  T
Q  187 gatgttgcct 196  Q
    ||||||||||    
T  14574276 gatgttgcct 14574285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 21863950 - 21864059
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    |||||||||||||||| |||||||||||   |||||||||||||| | ||| |||||||| ||| |||||| | | |||||||||||| ||||||||  |    
T  21863950 aggtgctaaaatttcactctacttcgcaggtgctattgttctctacttctacggtattttattttgttttgttgtttatggagtatttaatttattttga 21864049  T
Q  187 gatgttgcct 196  Q
    ||||||||||    
T  21864050 gatgttgcct 21864059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 30082244 - 30082142
Alignment:
Q  94 aaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttg 193  Q
    ||||||| ||||||||||| |  ||  ||||||||||||| ||||| ||||||||||||||||| | ||||   ||||||| |||||||| |||||||||    
T  30082244 aaaatttgagtctacttcgtaggagaaattgttctctaattctatgatattttgtttagttttggtctctactaagtatttaatttatttgaagatgttg 30082145  T
Q  194 cct 196  Q
    |||    
T  30082144 cct 30082142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 23305736 - 23305804
Alignment:
Q  89 gtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttg 157  Q
    ||||||||||||||||||||||| ||  || ||||||||||||||  ||||| ||||||||| ||||||    
T  23305736 gtgctaaaatttcagtctacttctcaggagttattgttctctaattttatggcattttgttttgttttg 23305804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 18667460 - 18667555
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| |  || | |||||  ||| |||||||| | ||| |||||||| ||||||||    
T  18667460 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttgatgtatatagagtatttaatttattt 18667555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 4539953 - 4540011
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| | ||| ||||||||    
T  4539953 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttctacggtatttt 4540011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 24441676 - 24441578
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||||| ||| ||||||||||||||  |||  ||||||||||| || | ||||| |||||| ||   ||||| |||||||| ||||||||||||||||    
T  24441676 ttaggtgttaatatttcagtctactttacatgtgctattgttctatacttctatgatattttattctattttggtttctatgaagtatttgatttattt 24441578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 39038257 - 39038164
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||||||||||||||||| |||||| |   ||||||||||||||   ||| |||||||| ||| |||||||| ||| || |||||||||| |||||    
T  39038257 aggtgctaaaatttcagtcaacttcgtaagtgctattgttctcta---ctacggtattttattttgttttgatgtctgtgaagtatttgatgtattt 39038164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 15995395 - 15995448
Alignment:
Q  143 ttttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||| ||| |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  15995395 ttttattttgttttggtttctattgagtatttgatttattttaagatgttgcct 15995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 30082096 - 30081982
Alignment:
Q  240 tgaagcgttagtaaaatcataacaagaaactaaaaaaggttttga---tggattacataagggcccattttttcaaactatgtctaaagcccctgaaacg 336  Q
    ||||||| || ||||||||||||||||||||||||||| || |||    | ||||  |||||| || ||||| ||||||||| |||| |||||| ||| |    
T  30082096 tgaagcgctactaaaatcataacaagaaactaaaaaagtttatgaagtagtattatgtaaggg-ccttttttgcaaactatgcctaaggcccctaaaatg 30081998  T
Q  337 ctaggaatggccctgg 352  Q
    ||||||| ||||||||    
T  30081997 ctaggaacggccctgg 30081982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 13754207 - 13754311
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| |  || | |||||  ||| |||||| | | ||| |||||||| ||||||||  ||    
T  13754207 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttatttttag 13754306  T
Q  188 atgtt 192  Q
    |||||    
T  13754307 atgtt 13754311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 135904 - 135982
Alignment:
Q  240 tgaagcgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatg 318  Q
    |||||||||| ||||||||||| || |||||||||||| || || || ||||  ||||| ||| |||| ||||||||||    
T  135904 tgaagcgttaataaaatcataataaaaaactaaaaaagtttatggtgtattatgtaaggtccccttttctcaaactatg 135982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 8113519 - 8113410
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    |||||||||||||||||||| ||||||||||  | ||||||||| || | |||   |||||| ||| |||||| | ||||| ||||| || ||||||||     
T  8113519 ttaggtgctaaaatttcagtgtacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtctatagagta-ttaatttatttt 8113421  T
Q  185 aagatgttgcc 195  Q
     ||||||||||    
T  8113420 cagatgttgcc 8113410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 12380188 - 12380229
Alignment:
Q  155 ttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||||||| |||||| |||||||||| ||||||||||||    
T  12380188 ttgatttctattgagtatctgatttattttaagatgttgcct 12380229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 23305904 - 23306002
Alignment:
Q  251 taaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatggccct 350  Q
    ||||||||||||||||||||||||  | || ||||  ||||  ||||| ||| ||||||||||||||| ||||  ||| | |||||||||||| ||||||    
T  23305904 taaaatcataacaagaaactaaaat-gtttatgatatattatgtaaggaccc-ttttttcaaactatgcctaagacccttaaaacgctaggaacggccct 23306001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 47 - 352
Target Start/End: Complemental strand, 31884684 - 31884381
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  31884684 ttactatcattagatgtcaaaaattcagtgtcgactatttaggtgctaaaatttcagtttacttcggagaagctattgttctctaatcctatggtatttt 31884585  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag-nnnnnnnntgaagc 245  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||         ||||||    
T  31884584 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaaaaaaatgaagc 31884487  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||  |||||||||||||||||||||||||||||| |||||| |||||||||||| |    
T  31884486 gttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggcccattttttcaaactatgtctaaggccccttaaacgctaggaacg 31884388  T
Q  346 gccctgg 352  Q
    |||||||    
T  31884387 gccctgg 31884381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 6024480 - 6024178
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||    
T  6024480 ttactatcattagatgtcaaaaattcagtgtctactatttaagtgctaaaatttcagtttatttcgcagaagcaattgttctctaatcctatggtatgtt 6024381  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  6024380 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcgtatagtgaaaagcgaagacaaaaaattaagtg 6024283  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||| |||||||||||| || ||||  ||||  ||||||||||||||||||||||||| |||| |||| | |||||||||||| ||    
T  6024282 ttagtaaaatcataacaaaaaactaaaaaagtttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaacgg 6024183  T
Q  347 ccctg 351  Q
    |||||    
T  6024182 ccctg 6024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 51 - 351
Target Start/End: Complemental strand, 23044620 - 23044327
Alignment:
Q  51 tatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgttt 150  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| | || |||||||      ||| | |    ||||||||    
T  23044620 tatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtctacttcggagaatctattgt------atc-tgtttagttttgttt 23044528  T
Q  151 agttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnn--tgaagcgtt 248  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||          |||||||||    
T  23044527 agttttggtttctattgagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaagaaaatgaagcgtt 23044430  T
Q  249 agtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatggcc 348  Q
    ||||||||||||||||||||||||||||| || ||||| ||||  ||||||| ||||||||| ||||||| |||| |||||| |||| ||||||| ||||    
T  23044429 agtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggctcattttttcgaactatgcctaaggccccttaaacactaggaacggcc 23044330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 6584073 - 6584171
Alignment:
Q  96 aatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgc 194  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  6584073 aatttcagtctacttcgcatgagcaattgctctctaattctatggtattttgtttagttttggtttctatagaatatttgatttatttgaagatgttgc 6584171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 33100439 - 33100347
Alignment:
Q  91 gctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||||||||||||||||||||  | |||||||||||| | ||| || ||||| ||| |||||| | ||||| |||||||||||||||||    
T  33100439 gctaaaatttcagtctacttcgcatgtgttattgttctctatttctaaggcattttattttgttttggtgtctatagagtatttgatttattt 33100347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 47185439 - 47185550
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    |||||||  |||||||||||||||||| |||  ||||||||||| || | ||| | |||||| | | |||||||| ||||| |||||||||||||||||     
T  47185439 ttaggtgtcaaaatttcagtctacttcacatttgctattgttctatatttctacgatattttatgttgttttgatgtctatagagtatttgatttatttt 47185538  T
Q  185 aagatgttgcct 196  Q
     |||||||||||    
T  47185539 tagatgttgcct 47185550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 44879908 - 44880017
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    |||||||||||||||| ||||||||||||||  | ||||||||| || | |||   |||||| ||| |||||| | |||| | |||||||||||||| |     
T  44879908 ttaggtgctaaaattttagtctacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtctaagaagtatttgatttatatt 44880007  T
Q  185 aagatgttgc 194  Q
     |||||||||    
T  44880008 cagatgttgc 44880017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 52448235 - 52448339
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| |  || | |||||  ||| |||||| | | ||| |||||||| ||||||||  ||    
T  52448235 ggtgctaaaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgtatatagagtatttaatttattttcag 52448334  T
Q  188 atgtt 192  Q
    |||||    
T  52448335 atgtt 52448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 10994161 - 10994103
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||||  |||||| || |||| | ||| ||||||||    
T  10994161 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttt 10994103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 19157185 - 19157243
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  19157185 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 19157243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 27941528 - 27941470
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  27941528 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 27941470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 9467197 - 9467144
Alignment:
Q  143 ttttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||||  ||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  9467197 ttttgttttcttttgctttctattgagtatttgatttattttaagatgtagcct 9467144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 22918066 - 22918103
Alignment:
Q  159 tttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  22918066 tttctattgagtatctgatttatttaaagatgttgcct 22918103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 36641630 - 36641667
Alignment:
Q  159 tttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  36641630 tttctattgagtatttgatttattttaagatgttgcct 36641667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 28143175 - 28142872
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||| | | |||||| ||||||||||||||||||||||||    
T  28143175 ttactatcattagatgtcaaaaattcagtgcctactatttaggtgctaaaatttcagtttactttggagaagctactgttctctaatcctatggtatttt 28143076  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||| |||||||||||||||||          |||||    
T  28143075 gtttagttttggtttctatggagtatttgatttatttaaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaaaaaaaatgaag 28142978  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||     
T  28142977 cgttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaac 28142879  T
Q  345 ggccctg 351  Q
    |||||||    
T  28142878 ggccctg 28142872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 14192040 - 14191738
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||    
T  14192040 ttactatcattagatgtcaaaaattcagtgtctactatttaagtgctaaaatttcagtttatttcgcagaagcaattgttctctaatcctatggtatgtt 14191941  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  14191940 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcttatagtgaaaagcgaagaaaaaaaattaagtg 14191843  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    |||||||||||||||||| |||||||||||| || ||||  ||||  ||||||||||||||||||||||||| |||| |||| | |||||||||||| ||    
T  14191842 ttagtaaaatcataacaaaaaactaaaaaagtttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaacgg 14191743  T
Q  347 ccctg 351  Q
    |||||    
T  14191742 ccctg 14191738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 51338018 - 51338314
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| | ||||||||||      ||| | |    ||||    
T  51338018 ttactatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtcta-ttcggagaagctattgt------atc-tgtttagtttt 51338109  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnn--tgaag 244  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||          |||||    
T  51338110 gtttagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaagaaaatgaag 51338207  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||| ||||||| |||| |||||| |||| |||||||     
T  51338208 cgttagtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaac 51338307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 31915560 - 31915665
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    |||||||||||||||||||||||  |||  ||||||||| |||| | |||||||||||| ||| |||||| | | ||| | |||||||||||||||  ||    
T  31915560 ggtgctaaaatttcagtctacttatcatgtgctattgttgtctacttctatggtattttattttgttttggtgtttatagtgtatttgatttattttcag 31915659  T
Q  188 atgttg 193  Q
    ||||||    
T  31915660 atgttg 31915665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 10142608 - 10142704
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    ||||||||||||||||||||||||| |||  ||||||||||| || | ||| |  ||||| ||| |||||| | |||||| ||||||||||||||||    
T  10142608 aggtgctaaaatttcagtctacttcacatgtgctattgttctatacttctacgacattttattttgttttggtgtctatgcagtatttgatttattt 10142704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 52460633 - 52460700
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttt 155  Q
    ||||||||||||||||||||||||||||  | |||||||||||| | ||| |||||||| ||| ||||    
T  52460633 ggtgctaaaatttcagtctacttcgcatgtgttattgttctctacttctacggtattttattttgttt 52460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 55851954 - 55851911
Alignment:
Q  386 attttccgctgcactttttagagaaaatccaattttctcatctt 429  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  55851954 attttccgctgcattttctagagaaaatccaattttctcatctt 55851911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 3665128 - 3665055
Alignment:
Q  120 tattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttg 193  Q
    |||||||||||| | |||||||||||| ||| |||||| | |||||  ||||||||||||||||  ||||||||    
T  3665128 tattgttctctacttctatggtattttattttgttttggtgtctatatagtatttgatttattttcagatgttg 3665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 25201790 - 25201866
Alignment:
Q  120 tattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||||| | ||| |||||||| | | || ||| | |||||||||||||||||||||||  |||||||||||    
T  25201790 tattgttctctacttctacggtattttatcttgtgttggtgtctatggagtatttgatttatttttagatgttgcct 25201866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 52459376 - 52459419
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctcta 131  Q
    ||||||||||||||||||||||||||||  | ||||||||||||    
T  52459376 ggtgctaaaatttcagtctacttcgcatgtgttattgttctcta 52459419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 7413756 - 7413698
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  7413756 ggtgctaaaatttcagtctacttcacatgtgctatttttctctatttctacggtatttt 7413698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 7459837 - 7459779
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  7459837 ggtgctaaaatttcagtctacttcacatgtgctatttttctctatttctacggtatttt 7459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 10095034 - 10094976
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  10095034 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 10094976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 24611094 - 24611006
Alignment:
Q  93 taaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||||| ||||||||||||  |||| ||||||||| | ||| |||||||| ||| |||||| ||| ||| || ||||||||||||||    
T  24611094 taaaatttcaatctacttcgcatgtgcta-tgttctctacttctacggtattttattttgttttggttt-tatagaatatttgatttattt 24611006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 28803906 - 28803848
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||||  |||||| || |||| | ||| ||||||||    
T  28803906 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttt 28803848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 13957711 - 13957820
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    ||||||||| |||||||||||||||| |||   ||||||||||| || | ||| | |||||| ||| ||||||   ||| | |||||||||||||||||     
T  13957711 ttaggtgctcaaatttcagtctactttgcacgtgctattgttctatacttctacgatattttattttgttttg--gtctttagagtatttgatttatttt 13957808  T
Q  185 aagatgttgcct 196  Q
     | |||||||||    
T  13957809 catatgttgcct 13957820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 42511357 - 42511313
Alignment:
Q  84 tttaggtgctaaaatttcagtctacttcgcataagctattgttct 128  Q
    ||||||||||||||||||||||||||| || |  |||||||||||    
T  42511357 tttaggtgctaaaatttcagtctactttgcgtgtgctattgttct 42511313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 47 - 343
Target Start/End: Complemental strand, 2536 - 2240
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  2536 ttactatcattagatatcaaaaattcagtgtctactatttaggtgctaaaatttcagtatacttcggagaagctattgttctctaatcctatggtatttt 2437  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||         |||||||| |||| ||||||||||||          |||||    
T  2436 gtttagttttggtttctacggagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttataatgaaaagcgaagaaaaaaaaaatgaag 2339  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaa 343  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  2338 cgttagtaaaatcataacaagaaactaaaaaagtttatgatgcattatgtaagggcccattttttcaaactatgccaaaagccccttaaacgctaggaa 2240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 6927285 - 6926981
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  6927285 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 6927186  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||          || ||    
T  6927185 gtttagttttggtttctatgaagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatgtag 6927088  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    ||||||||||||||||||||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||     
T  6927087 cgttagtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaac 6926988  T
Q  345 ggccctg 351  Q
    |||||||    
T  6926987 ggccctg 6926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 28516834 - 28517138
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  28516834 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 28516933  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||         |||||||| |||||||||||||||||          || ||    
T  28516934 gtttagttttggtttctatgaagtatttgatttatttgaagatgttgcctaaaaaag--cttttatcttatagtgaaaagcgaagaaaagaaaaatgtag 28517031  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    | ||||||||||||||||||||||||||||||  || ||||  ||||  ||||||||||||||||||||||||| |||| |||||| ||||||||||||     
T  28517032 cattagtaaaatcataacaagaaactaaaaaaatttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaac 28517131  T
Q  345 ggccctg 351  Q
    |||||||    
T  28517132 ggccctg 28517138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 11994442 - 11994156
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11994442 ttactatcattagatgtcccaaattcactgtctactatttaggtactaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 11994343  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag-nnnnnnnntgaagc 245  Q
    |||||||||||                  |||||||||||||||||||||        |||||||||||||||||||||||||||         ||||||    
T  11994342 gtttagttttg------------------atttatttaaagatgttgcct-aaaaaaaccttttatcctatagtgaaaagcgaagaaaaaaaaatgaagc 11994262  T
Q  246 gttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||| |    
T  11994261 gttagtaaaatcataacaagaaactaaaaaaggttttgatgtattatgtaacggcccattttttcaaactatgtctaaggcccctgaaacgctaggaacg 11994162  T

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Target: chr8; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 47 - 348
Target Start/End: Complemental strand, 2878932 - 2878632
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||    
T  2878932 ttactatcattagatgtcaaaaattcagtgtctactatttaagtgctaaaatttcagtttatttcgcagaagcaattgttctctaatcctatggtatttt 2878833  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  2878832 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcttatagtgaaaagcgaagaaaaaaaattaagtg 2878735  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggccca-ttttttcaaactatgtctaaagcccctgaaacgctaggaatg 345  Q
    |||||||||||||||||| |||||||||||| || ||||  ||||   ||||||||| ||||||||||||||| ||||  ||| | |||||||||||| |    
T  2878734 ttagtaaaatcataacaaaaaactaaaaaagtttatgatatattatgcaagggcccatttttttcaaactatgcctaagacccttaaaacgctaggaacg 2878635  T
Q  346 gcc 348  Q
    |||    
T  2878634 gcc 2878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 28509627 - 28509732
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  28509627 ttactatcattagatgtcaaaaattcagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgttctctaatcctatagtatttt 28509726  T
Q  147 gtttag 152  Q
    ||||||    
T  28509727 gtttag 28509732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 2807690 - 2807593
Alignment:
Q  95 aaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgtt 192  Q
    |||||||||| ||||| |||  ||| |||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  2807690 aaatttcagtatactttgcaagagcaattgttgtctaattctatggtattttgtttagttttggtttctatggagcatttgatttatttgaagatgtt 2807593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 9381855 - 9381757
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||||||||||||||||||||||||||  ||||||||||| || | ||| | || ||| ||| |||||| | |||||||||||||||||||||||    
T  9381855 ttaggtgctaaaatttcagtctacttcgcatgtgctattgttctatacttctacgatactttattttgttttggtgtctatggagtatttgatttattt 9381757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 11648127 - 11648016
Alignment:
Q  85 ttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattta 184  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||| |  ||| ||||||| ||| |||||  | |||||| ||||||||||| |||||    
T  11648127 ttaggtgctaaaatttcagtctacttcgcatgtgttattgttcactacttttatagtattttattttgtttttgtgtctatgaagtatttgattgattta 11648028  T
Q  185 aagatgttgcct 196  Q
     |||||||||||    
T  11648027 cagatgttgcct 11648016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 16729826 - 16729926
Alignment:
Q  92 ctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgt 191  Q
    ||||||||||||||||||||||||  |||||| ||||||| | ||| | |||||| ||| |||||| | |  || |||||||| ||||||||  ||||||    
T  16729826 ctaaaatttcagtctacttcgcatgtgctatttttctctacttctacgatattttattttgttttggtgtacatagagtatttaatttattttcagatgt 16729925  T
Q  192 t 192  Q
    |    
T  16729926 t 16729926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 1981688 - 1981731
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctcta 131  Q
    |||||||||||||||||||||||| |||| |||||| |||||||    
T  1981688 ggtgctaaaatttcagtctacttcacatatgctatttttctcta 1981731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 45117558 - 45117616
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||||||||  |||||| || |||| | ||| ||||||||    
T  45117558 ggtgctaaaatttcagtctacttcgcatttgctatttttttctacttctacggtatttt 45117616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 24683281 - 24683329
Alignment:
Q  148 tttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||| ||| |||||||||||| |||||||| ||||| ||||||    
T  24683281 tttagttttggtttatatggagtatttcatttatttgaagattttgcct 24683329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 28945539 - 28945236
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||    
T  28945539 ttactatcattagatgtcaaaaattcagtgcctactatttaggtgctaaaatttcagtttactttggagaagctattgttctctaatcctatggtatttt 28945440  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaag--nnnnnnnntgaag 244  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||| |||||||||||||||||          |||||    
T  28945439 gtttagttttggtttctatggagtatttgatttatttaaagatgttgcctaaaaaaa--cttttatcttatagtgaaaagcgaagaaaaaaaaaatgaag 28945342  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaat 344  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||  |||||| |||||||||||||||||| |||| |||||| ||||| ||||||     
T  28945341 cgttagtaaaatcataacaagaaactaaaaaa-gttatgatgtattatgtaagggtccattttttcaaactatgcctaaggccccttaaacgttaggaac 28945243  T
Q  345 ggccctg 351  Q
    |||||||    
T  28945242 ggccctg 28945236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 47 - 352
Target Start/End: Original strand, 26222062 - 26222365
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||| | ||||||| |||||| |||||| |||||||||||| ||| || |||||| |||| ||||||||||||||||||||||| ||    
T  26222062 ttactatcattagatgtaaaaaattcagtgtctattatttaagtgctaaaattttagtttatttcgcagaagcaattgttctctaatcctatggtatgtt 26222161  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcg 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||||||||        | ||| |    
T  26222162 gtttagttttggtttctatggagtatttgatttatttgaagatgttgcct--agaaaaccttttatcttatagtgaaaagcgaagaaaaaaaattaagtg 26222259  T
Q  247 ttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatgg 346  Q
    ||| |||||||||||||| |||||||||||| || ||||  ||||  |||||| |||||||||||||||||| |||| |||| | |||||||||||| ||    
T  26222260 ttactaaaatcataacaaaaaactaaaaaagtttatgatatattatgtaagggtccattttttcaaactatgcctaaggcccttaaaacgctaggaacgg 26222359  T
Q  347 ccctgg 352  Q
    ||||||    
T  26222360 ccctgg 26222365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 47 - 343
Target Start/End: Original strand, 36297069 - 36297358
Alignment:
Q  47 ttactatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||      ||| | |    ||||    
T  36297069 ttactatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgt------atc-tgtttagtttt 36297161  T
Q  147 gtttagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnn--tgaag 244  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||          |||||    
T  36297162 gtttagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaagaaaatgaag 36297259  T
Q  245 cgttagtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaa 343  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||| ||||||| ||||  ||||| |||| |||||||    
T  36297260 cgttagtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcgaactatgcctaagaccccttaaacactaggaa 36297358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 50 - 351
Target Start/End: Original strand, 42722607 - 42722894
Alignment:
Q  50 ctatcattagatgtcacaaattcattgtctactatttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtt 149  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||      ||| | |    |||||||    
T  42722607 ctatcattagatgtcaaaaattaagtgtctactatttaggtgctaaaatttcagtctacttcggagaagctattgt------atc-tgtttagttttgtt 42722699  T
Q  150 tagttttgatttctatggagtatttgatttatttaaagatgttgcctnnnnnnnnccttttatcctatagtgaaaagcgaagnnnnnnnntgaagcgtta 249  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||          | ||||| |||||||||||| ||||           |||||||    
T  42722700 tagttttggtttctatagagtatttgatttatttgaagatgttgcctaaaaaagt--tgttatcttatagtgaaaagtgaaggaaaag-----agcgtta 42722792  T
Q  250 gtaaaatcataacaagaaactaaaaaaggttttgatggattacataagggcccattttttcaaactatgtctaaagcccctgaaacgctaggaatggccc 349  Q
    |||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||||||| ||||||| |||| |||||| |||| ||||||| |||||    
T  42722793 gtaaaatcataacaagaaactaaaaaagtttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggccc 42722892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 44310740 - 44310845
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaag 187  Q
    ||||||||||||||||| ||||| ||||  |||||||||||||| | ||| | |||||| ||| |||||| | | ||| |||||||||||||||||  ||    
T  44310740 ggtgctaaaatttcagtatactttgcatgtgctattgttctctacttctacgatattttattttgttttggtgtgtatagagtatttgatttattttcag 44310839  T
Q  188 atgttg 193  Q
    ||||||    
T  44310840 atgttg 44310845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 20226818 - 20226739
Alignment:
Q  352 ggtatcagaactaatttggtacccgctttgaaggattttccgctgcactttttagagaaaatccaattttctcatcttca 431  Q
    ||||||||| ||||| ||||| || | |||||||||||||||||||| ||| | ||||||||  |||| |||||||||||    
T  20226818 ggtatcagagctaatctggtatcctccttgaaggattttccgctgcattttcttgagaaaatttaattctctcatcttca 20226739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 17967336 - 17967230
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggta-ttttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| |||| |||| ||| |||||||| | ||| || ||||| ||||||||  |    
T  17967336 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttgatgtatatagaatatttaatttattttca 17967237  T
Q  187 gatgttg 193  Q
    |||||||    
T  17967236 gatgttg 17967230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 18705706 - 18705630
Alignment:
Q  352 ggtatcagaactaatttggtacccgctttgaaggatttt--ccgctgcactttttagagaaaatccaattttctcat 426  Q
    ||||||||| ||||| ||||| || | ||||||||||||  |||||||| ||| |||||||||| ||||||||||||    
T  18705706 ggtatcagagctaatctggtatccaccttgaaggattttttccgctgcattttctagagaaaattcaattttctcat 18705630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 5049547 - 5049605
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  5049547 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 5049605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 21906471 - 21906529
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    |||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  21906471 ggtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 21906529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 22070595 - 22070653
Alignment:
Q  88 ggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||| ||||||||||||||||||||  |||||| ||||||| | ||| ||||||||    
T  22070595 ggtgctagaatttcagtctacttcgcatgtgctatttttctctacttctacggtatttt 22070653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 48596363 - 48596306
Alignment:
Q  89 gtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtatttt 146  Q
    ||||||||||||||||||||||| |||  |||||| ||||||| | ||| ||||||||    
T  48596363 gtgctaaaatttcagtctacttcacatgtgctatttttctctacttctacggtatttt 48596306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 9908179 - 9908095
Alignment:
Q  352 ggtatcagaactaatttggtacccgctttgaagga-ttttccgctgcactttttagagaaaatccaattttctcatcttcatttt 435  Q
    ||||||||| ||||| ||||| || | |||||| | |||||||||||||||| | ||||||||  ||||||||||  ||||||||    
T  9908179 ggtatcagagctaatctggtatccaccttgaagaaattttccgctgcactttcttgagaaaataaaattttctcactttcatttt 9908095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 12028218 - 12028326
Alignment:
Q  84 tttaggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||||||||||||||||||||||| |||  | | ||||||| || | ||| | |||||| ||| |||||  | |||||| | |||||||||| |||    
T  12028218 tttaggtgctaaaatttcagtctacttcacatgtgttgttgttctatacttctaggatattttattttgtttttgtgtctatgaaatatttgatttgttt 12028317  T
Q  184 aaagatgtt 192  Q
      |||||||    
T  12028318 tcagatgtt 12028326  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 42055795 - 42055719
Alignment:
Q  120 tattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    |||||||||||| | ||| |||||||| ||| |||||| | |||||  ||||||||||||||||  | |||||||||    
T  42055795 tattgttctctacttctacggtattttattttgttttggtgtctataaagtatttgatttattttcatatgttgcct 42055719  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 49228332 - 49228288
Alignment:
Q  84 tttaggtgctaaaatttcagtctacttcgcataagctattgttct 128  Q
    ||||||||||||||||| ||||| ||||||| | |||||||||||    
T  49228332 tttaggtgctaaaatttaagtctgcttcgcagatgctattgttct 49228288  T

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Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 1065 - 1155
Alignment:
Q  93 taaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttattt 183  Q
    |||||||| ||||||||| ||||  ||||||||||| || | ||||| |||||| ||| |||||| | |||||||||||||||||||||||    
T  1065 taaaattttagtctactttgcatgtgctattgttctatatttctatgatattttattttgttttggtgtctatggagtatttgatttattt 1155  T

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Target: scaffold1364 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 1198 - 1307
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    ||||||| ||||||||||| ||||||||   | ||||||| |||| | ||| |||||||| ||| | |||||| |||||| ||| ||||||||||||  |    
T  1198 aggtgctgaaatttcagtcaacttcgcaagtgttattgttttctacttctacggtattttattttggtttgatgtctatgaagtgtttgatttattttca 1297  T
Q  187 gatgttgcct 196  Q
    ||||||||||    
T  1298 gatgttgcct 1307  T

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Target: scaffold1266 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 1664 - 1773
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    |||||||||||||||||||||||||  |   | |||||||||||| | ||| |||||||| ||| | |||| | |||||| ||| ||||||||||||  |    
T  1664 aggtgctaaaatttcagtctacttcataagtgttattgttctctacttctacggtattttattttggtttgctgtctatgaagtgtttgatttattttca 1763  T
Q  187 gatgttgcct 196  Q
    ||||||||||    
T  1764 gatgttgcct 1773  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 18354 - 18245
Alignment:
Q  87 aggtgctaaaatttcagtctacttcgcataagctattgttctctaatcctatggtattttgtttagttttgatttctatggagtatttgatttatttaaa 186  Q
    |||||||||||||||||||||||||  |   | |||||||||||| | |||||||||||| ||| | |||| | |||||  | | ||||||||||||  |    
T  18354 aggtgctaaaatttcagtctacttcataagtgttattgttctctacttctatggtattttattttggtttgctgtctattaaatgtttgatttattttta 18255  T
Q  187 gatgttgcct 196  Q
    ||| ||||||    
T  18254 gatattgcct 18245  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 66682 - 66735
Alignment:
Q  143 ttttgtttagttttgatttctatggagtatttgatttatttaaagatgttgcct 196  Q
    ||||||||  ||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  66682 ttttgttttcttttgctttctattgagtatttgatttattttaagatgtagcct 66735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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