View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_34 (Length: 456)

Name: NF1836_high_34
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_34
NF1836_high_34
[»] chr6 (6 HSPs)
chr6 (18-442)||(5542441-5542868)
chr6 (220-342)||(15605885-15606007)
chr6 (198-279)||(22534535-22534616)
chr6 (214-294)||(11731554-11731634)
chr6 (222-294)||(34104358-34104430)
chr6 (257-342)||(14680336-14680421)
[»] chr3 (11 HSPs)
chr3 (195-344)||(49525060-49525209)
chr3 (162-294)||(18720861-18720993)
chr3 (222-292)||(26046912-26046982)
chr3 (222-342)||(27608796-27608916)
chr3 (222-294)||(34497265-34497337)
chr3 (222-342)||(42340170-42340290)
chr3 (195-238)||(1834414-1834457)
chr3 (257-296)||(2121301-2121340)
chr3 (222-294)||(2615705-2615777)
chr3 (222-286)||(53497262-53497326)
chr3 (258-294)||(55199733-55199769)
[»] scaffold0252 (1 HSPs)
scaffold0252 (195-344)||(13293-13440)
[»] chr7 (11 HSPs)
chr7 (198-294)||(28598099-28598195)
chr7 (198-327)||(6056246-6056375)
chr7 (214-294)||(44481309-44481389)
chr7 (222-342)||(16732107-16732227)
chr7 (222-342)||(17710241-17710361)
chr7 (222-294)||(24139233-24139305)
chr7 (222-342)||(9328495-9328615)
chr7 (222-294)||(24251661-24251733)
chr7 (223-342)||(29200849-29200968)
chr7 (257-351)||(30824422-30824516)
chr7 (233-342)||(22289415-22289524)
[»] chr8 (8 HSPs)
chr8 (195-327)||(8670180-8670312)
chr8 (222-294)||(13415245-13415317)
chr8 (222-351)||(7127388-7127517)
chr8 (222-342)||(477949-478069)
chr8 (214-294)||(11870486-11870566)
chr8 (222-294)||(40588623-40588695)
chr8 (222-286)||(9497008-9497072)
chr8 (222-294)||(33642657-33642729)
[»] chr1 (13 HSPs)
chr1 (223-342)||(5609513-5609632)
chr1 (195-294)||(13075896-13075994)
chr1 (199-294)||(17975252-17975347)
chr1 (222-294)||(4395380-4395452)
chr1 (198-254)||(323772-323828)
chr1 (222-342)||(16816690-16816810)
chr1 (222-294)||(25682873-25682945)
chr1 (214-342)||(44602926-44603049)
chr1 (222-342)||(48949617-48949737)
chr1 (211-286)||(17371678-17371753)
chr1 (214-341)||(24538662-24538789)
chr1 (258-357)||(51113474-51113573)
chr1 (257-310)||(23163357-23163410)
[»] chr4 (17 HSPs)
chr4 (160-417)||(40727062-40727319)
chr4 (160-356)||(21163276-21163471)
chr4 (195-357)||(33582849-33583008)
chr4 (222-354)||(51259422-51259554)
chr4 (222-342)||(56065807-56065927)
chr4 (195-285)||(39251572-39251662)
chr4 (224-342)||(49951487-49951605)
chr4 (232-342)||(51734875-51734985)
chr4 (222-342)||(37245745-37245865)
chr4 (223-294)||(32576942-32577013)
chr4 (222-294)||(2065075-2065147)
chr4 (214-342)||(41835196-41835324)
chr4 (222-281)||(21321765-21321824)
chr4 (244-351)||(29655581-29655688)
chr4 (257-294)||(28426405-28426442)
chr4 (258-351)||(44936011-44936104)
chr4 (257-294)||(49119328-49119365)
[»] chr5 (12 HSPs)
chr5 (160-279)||(32378181-32378300)
chr5 (195-282)||(12717743-12717830)
chr5 (195-282)||(12778967-12779054)
chr5 (222-286)||(4268329-4268393)
chr5 (222-294)||(22767166-22767238)
chr5 (223-294)||(25731030-25731101)
chr5 (232-294)||(20205177-20205239)
chr5 (222-294)||(23075054-23075126)
chr5 (258-354)||(26597386-26597482)
chr5 (257-342)||(31908324-31908409)
chr5 (258-294)||(8388308-8388344)
chr5 (222-294)||(11375415-11375487)
[»] chr2 (6 HSPs)
chr2 (195-357)||(25538056-25538218)
chr2 (222-322)||(88753-88853)
chr2 (222-294)||(34695797-34695869)
chr2 (222-294)||(34718209-34718281)
chr2 (257-342)||(9710129-9710214)
chr2 (222-280)||(14827315-14827373)
[»] scaffold0446 (1 HSPs)
scaffold0446 (222-342)||(364-484)


Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 5542868 - 5542441
Alignment:
Q  18 aatggaacacatttttgtgatggagctgcatgttcacaccagttgctcacaatgtgttatgcatctattcttactttgaaaacagaattaggaaagtggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542868 aatggaacacatttttgtgatggagctgcatgttcacaccagttgctcacaatgtgttatgcatctattcttactttgaaaacagaattaggaaagtggt 5542769  T
Q  118 agggtttgaattttagctcacacnnnnnnnnnn---accgaaaccaacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctca 214  Q
    |||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542768 agggtttgaattttagctcacactttttttttttttaccgaaaccaacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctca 5542669  T
Q  215 aaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542668 aaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtg 5542569  T
Q  315 aagctaacatagaaataatattagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542568 aagctaacatagaaataatattagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctc 5542469  T
Q  415 aaaaaatcatctttctccacccttgatg 442  Q
    ||||||||||||||||||||||||||||    
T  5542468 aaaaaatcatctttctccacccttgatg 5542441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 15605885 - 15606007
Alignment:
Q  220 atggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagct 319  Q
    ||||||||||| ||||||||| ||||||||||| |  | |||||||||||||||||||||||  ||| |||| || |  || |||| ||||||| ||| |    
T  15605885 atggtgactagcccaagaataagccgccctagctaaagcatgagcaaccatgttcgcttgtctgctaacaaaattcacctcgaagttggaatgtaaagat 15605984  T
Q  320 aacatagaaataatattagaaac 342  Q
    |||  | |||||||| |||||||    
T  15605985 aactgataaataatactagaaac 15606007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 22534616 - 22534535
Alignment:
Q  198 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttg 279  Q
    |||||||||||||||||||||||||| || |   ||||||| ||||||||||| |||  |||||| || |||||||||||||    
T  22534616 aaggaggacaaatctcaaaaacatggcgattgagccaagaaaatgccgccctaacaatcgtatgaacatccatgttcgcttg 22534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 11731554 - 11731634
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||| ||||||||||| ||||||  | || |||||||| |  ||||||||||||||||||||||| | |||| |||||||    
T  11731554 aaaaatatggtgactagcccaagagcaggctgccctagctaaagtatgagcaaccatgttcgcttgcctcctaacaaactt 11731634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 34104358 - 34104430
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| |||||||| |||| |   |||||||||||||||| ||||||| |||| |||||||    
T  34104358 ggtgactagcccaagaacatgccgccatagctaagctatgagcaaccatgtttgcttgtctcctaacaaactt 34104430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 14680421 - 14680336
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 342  Q
    |||||||||||||||||||| |||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  14680421 gtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 14680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 344
Target Start/End: Original strand, 49525060 - 49525209
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |  ||||||||||||| || |||||| |||||||||||||||||||| |||||||    
T  49525060 tacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaagggtgtgagcagccatgttcgcttgtcgcctaacaaactt 49525159  T
Q  295 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaacta 344  Q
    ||  ||||| | ||||||| || |||| |||||  |||||  ||||||||    
T  49525160 tacctcaaaattggaatgtaaaactaaaatagacttaataaaagaaacta 49525209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 18720993 - 18720861
Alignment:
Q  162 cttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatg 261  Q
    ||||| ||||||||||  |||||| ||  | | ||||||||||||||||||||||||||||| || ||| ||||||| |||||||| ||||||  |||||    
T  18720993 cttaattgatatcattaattaaaacagtgtcaatacaaggaggacaaatctcaaaaacatggcgattaggccaagaacatgccgccatagcaatcgtatg 18720894  T
Q  262 agcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||||| | ||||  ||||| |||||||    
T  18720893 agcaaccatgtgcacttgatgcctaacaaactt 18720861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 26046982 - 26046912
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaac 292  Q
    ||||||||| ||||||||| ||||||||||| |  ||||||||||||||||||||||||| |||| |||||    
T  26046982 ggtgactagcccaagaataagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaac 26046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 27608796 - 27608916
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| | ||||| ||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  27608796 ggtgactagcccaagaacaggccgctctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttggaatgtaaagataa 27608895  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  27608896 ctgaaaaataatactagaaac 27608916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 34497265 - 34497337
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| | ||||||||||| |   |||||||||||||||||||||||| |||| |||||||    
T  34497265 ggtgactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaactt 34497337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 42340170 - 42340290
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| | ||||| | ||||||||| | |  || |||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||     
T  42340170 ggtgactagccaaagaacaggccgccctatctaaagtgtgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatag 42340269  T
Q  322 catagaaataatattagaaac 342  Q
    |  | ||||||||||||||||    
T  42340270 ctgataaataatattagaaac 42340290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 1834414 - 1834457
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaa 238  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||    
T  1834414 tacaaggaggataaatctcaataacatgttgactagaccaagaa 1834457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 2121340 - 2121301
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaacttta 296  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  2121340 gtatgagcaaccatgttcgcttgtctcctaacaaacttta 2121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 2615777 - 2615705
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| | | ||||||||  |  ||||||||||||||||||| ||||| |||| |||||||    
T  2615777 ggtgactagcccaagaacaggtcgccctagttaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 2615705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 53497326 - 53497262
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 286  Q
    ||||||||| ||||||| | || |||||||| |  ||||||||| ||||||||||||||| ||||    
T  53497326 ggtgactagcccaagaacaggctgccctagctaaagtatgagcagccatgttcgcttgtctccta 53497262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 55199769 - 55199733
Alignment:
Q  258 tatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||||||||||||||||| |||| |||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaactt 55199733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 195 - 344
Target Start/End: Complemental strand, 13440 - 13293
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||| | |||||||||||||| |  |||||| |||||||||||||||| ||| |||||||    
T  13440 tacaaggaggacaaatctcaaagacacggtgactagcccaagaacaggccgccctagcaagag--tgagcagccatgttcgcttgtcgtctaacaaactt 13343  T
Q  295 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaacta 344  Q
    ||  ||||||| || |||| || |||| |||||  |||||  ||||||||    
T  13342 tacctcaaagttgggatgtaaaactaaaatagacttaataagagaaacta 13293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 28598099 - 28598195
Alignment:
Q  198 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||  ||||||||| ||||||| ||||| |||||  |||||||    
T  28598099 aaggaggacaaatctcaaaaacatggcgactaggctaagaatatgccgccctagcaatcgtatgagcagccatgtttgcttgacgcctgacaaactt 28598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 6056246 - 6056375
Alignment:
Q  198 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttat 297  Q
    ||||||||||||| | |||||||||| |||||| ||||||| |||||||||||||||  |||||| |||||||||||||||| |||| | ||||||| |     
T  6056246 aaggaggacaaatttaaaaaacatggcgactaggccaagaacatgccgccctagcaatcgtatgaacaaccatgttcgcttgacgcccaacaaacttcac 6056345  T
Q  298 gtcaaagtcggaatgtgaagctaacataga 327  Q
     ||||||| ||||  | ||||||| |||||    
T  6056346 ctcaaagttggaaaataaagctaatataga 6056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 44481389 - 44481309
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||| ||||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  44481389 aaaaatatggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 44481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 16732227 - 16732107
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  16732227 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 16732128  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  16732127 ctgataaataatactagaaac 16732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 17710361 - 17710241
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  17710361 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 17710262  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  17710261 ctgataaataatactagaaac 17710241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 24139305 - 24139233
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24139305 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24139233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 9328495 - 9328615
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||||| | || | |||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  9328495 ggtgactagcccaagaataggacgtcgtagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaagataa 9328594  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  9328595 ctgataaataatactagaaac 9328615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 24251733 - 24251661
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||  |||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24251733 ggtgactagctcaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24251661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 29200849 - 29200968
Alignment:
Q  223 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 322  Q
    |||||||| ||||||| |  |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||    
T  29200849 gtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataac 29200948  T
Q  323 atagaaataatattagaaac 342  Q
      | |||||||| |||||||    
T  29200949 tgataaataatactagaaac 29200968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 351
Target Start/End: Original strand, 30824422 - 30824516
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 351  Q
    |||||||||||||||||||||| || |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||| | ||||||| || |||||    
T  30824422 gtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaatgtaaagataactgataaataagactagaaacaataacata 30824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 22289524 - 22289415
Alignment:
Q  233 caagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataa 332  Q
    |||||| | ||||||||||| |   |||||||||||||||||||||||| |||| ||||| | |  || |||| ||||||| ||| ||||  | ||||||    
T  22289524 caagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaagataactgaaaaataa 22289425  T
Q  333 tattagaaac 342  Q
    || |||||||    
T  22289424 tactagaaac 22289415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 327
Target Start/End: Original strand, 8670180 - 8670312
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||| ||||||||||||| | | ||||||||| ||||||| | |||||||||| ||| || |||||||||||||| | |||||||||| |||||||    
T  8670180 tacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaaactt 8670279  T
Q  295 tatgtcaaagtcggaatgtgaagctaacataga 327  Q
    ||  ||||||| || |||| || |||| |||||    
T  8670280 tacctcaaagttgggatgtaaaactaaaataga 8670312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 13415317 - 13415245
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| ||||||||||||    
T  13415317 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgcttgtctcctagcaaactt 13415245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 351
Target Start/End: Complemental strand, 7127517 - 7127388
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| |  |||||||||| |  |||||||||| |||||||||||||| |||| ||||||| |  ||||||| ||||||| ||| |||    
T  7127517 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttggaatgtaaagataa 7127418  T
Q  322 catagaaataatattagaaactatgacata 351  Q
    |  | |||||||| | ||||| || |||||    
T  7127417 ctgataaataatacttgaaacaataacata 7127388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 477949 - 478069
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||| ||| ||||||| | | ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  |  |||| ||||||| ||| |||    
T  477949 ggtgattagcccaagaacaggacgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaagataa 478048  T
Q  322 catagaaataatattagaaac 342  Q
    |  | ||||||||||||||||    
T  478049 ctgataaataatattagaaac 478069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 11870566 - 11870486
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||| ||||||| ||| ||||||| | |  |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  11870566 aaaaatatggtgattagcccaagaacaggttgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 11870486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 40588623 - 40588695
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| | ||||||||||| |  ||||| |||| |||||||||||||| |||| |||||||    
T  40588623 ggtgactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttcgcttgtctcctaacaaactt 40588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 9497072 - 9497008
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 286  Q
    ||||||||| ||||||| | ||||||||||| |  |||| |||||| ||||||||||||| ||||    
T  9497072 ggtgactagtccaagaacaggccgccctagctaaagtataagcaactatgttcgcttgtctccta 9497008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 33642657 - 33642729
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| |  || ||||||| |  |||||| |||||||||||||||||| |||| |||||||    
T  33642657 ggtgactagcccaagaacagaccaccctagctaaagtatgaacaaccatgttcgcttgtctcctaacaaactt 33642729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 5609632 - 5609513
Alignment:
Q  223 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 322  Q
    |||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||    
T  5609632 gtgactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataac 5609533  T
Q  323 atagaaataatattagaaac 342  Q
      | |||||||| |||||||    
T  5609532 tgataaataatactagaaac 5609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 13075896 - 13075994
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||||||||||||||||||||||| |||||| | | ||| |||||||||||| ||  ||||||||| |||||||||||||  ||||| |||||||    
T  13075896 tacaaggaggacaaatctcaaaaacatggggactaggctatgaacatgccgccctag-aatggtatgagcagccatgttcgcttgatgcctaacaaactt 13075994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 17975347 - 17975252
Alignment:
Q  199 aggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||||||||||||||||||| |||||| |||| || ||| | ||||||||| ||||||||||  |||||||| ||| |||||  |||||||    
T  17975347 aggaggacaaatctcaaaaacatggcgactaggccaaaaacatgtctccctagcaattgtatgagcagtcatgttcgtttgacgcctgacaaactt 17975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 4395452 - 4395380
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  4395452 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 4395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 323772 - 323828
Alignment:
Q  198 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaa 254  Q
    |||||| ||||||||||||||||| | |||||| |||||||||||| ||| ||||||    
T  323772 aaggagaacaaatctcaaaaacatagcgactaggccaagaatatgcggccttagcaa 323828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 16816690 - 16816810
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||||| | ||||||| | |  |||||||||||||||||| ||| || |||| ||||||| |  | ||||| ||||||| ||| |||    
T  16816690 ggtgactagcccaagaataagtcgccctaactaaagtatgagcaaccatgttctcttctctcctaacaaacttcaccttaaagttggaatgtaaagataa 16816789  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  16816790 ctgataaataatactagaaac 16816810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 25682945 - 25682873
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||  ||||||| ||||| ||||||| |  ||||||||||||||| ||||||||| |||| |||||||    
T  25682945 ggtgactaacccaagaacatgcctccctagctaaagtatgagcaaccatgctcgcttgtctcctaacaaactt 25682873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 44603049 - 44602926
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 313  Q
    ||||| ||||||||||| ||||||| | |||||||||      |||||||| |||||||||||||||| |||| ||||||| |  || |||| |||||||    
T  44603049 aaaaatatggtgactagcccaagaacaggccgccctaa-----gtatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttggaatgt 44602955  T
Q  314 gaagctaacatagaaataatattagaaac 342  Q
     ||| ||||  | |||||||| |||||||    
T  44602954 aaagataactgataaataatactagaaac 44602926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 48949617 - 48949737
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| | || |||||||| |   |||||| ||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  48949617 ggtgactagcccaagaacaggctgccctagctaagctatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 48949716  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  48949717 ctgaaaaataatactagaaac 48949737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 17371753 - 17371678
Alignment:
Q  211 ctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 286  Q
    |||||||| | |||||||||  |||||| ||||||||||||| |  |||||||| ||||| |||||||||| ||||    
T  17371753 ctcaaaaatacggtgactagctcaagaacatgccgccctagctaaggtatgagcgaccatattcgcttgtctccta 17371678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 24538789 - 24538662
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 313  Q
    ||||| ||||||||||| | ||||| |||  | ||||||||  |||||||||| |||||||||||||  |||| | ||||| |  |||||||  ||||||    
T  24538789 aaaaatatggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgt 24538690  T
Q  314 gaagctaacatagaaataatattagaaa 341  Q
     ||| ||||| | |||||||| ||||||    
T  24538689 aaagataacagataaataatactagaaa 24538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 51113573 - 51113474
Alignment:
Q  258 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 357  Q
    ||||||||||||||||||||| || |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| ||  ||||||||||    
T  51113573 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgttaagataactgaaaaataatactagaaacaatagcataaaactc 51113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 23163410 - 23163357
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaa 310  Q
    |||||||||||||||||||||||||  ||| |||||||||| || |||| ||||    
T  23163410 gtatgagcaaccatgttcgcttgtcttctaacaaactttatctcgaagttggaa 23163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 417
Target Start/End: Complemental strand, 40727319 - 40727062
Alignment:
Q  160 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 259  Q
    ||||||| | ||||||||  |||||| ||  ||| || ||||||||||||||||||| |||||| |||||| |||| || ||| | |||||||||  |||    
T  40727319 aacttaatttatatcattaattaaaatagcattaatataaggaggacaaatctcaaatacatggcgactaggccaaaaacatgtctccctagcaatcgta 40727220  T
Q  260 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactcag 359  Q
    |||||||| ||| ||||||| |||||| ||||||| |  ||||||| ||||  | ||||| ||| |||  ||||  |||| ||||| |||| |||||| |    
T  40727219 tgagcaactatgctcgcttgacgcctaacaaacttcacctcaaagttggaaaataaagcttacacagacttaatgatagatactataacattaaactctg 40727120  T
Q  360 aagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaa 417  Q
    |||| |||   || ||||  ||||| |  ||||| |||||| | ||||||||||||||    
T  40727119 aagcaccactactctgggctgaaatccgatccacaagagtacgagaatccgtctcaaa 40727062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 356
Target Start/End: Original strand, 21163276 - 21163471
Alignment:
Q  160 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 259  Q
    ||||||||||||||||||  |||||| || |  | |||||||||||| ||||| |||||||||||||||||  |||||| ||| |||| ||||||  |||    
T  21163276 aacttaactgatatcattaattaaaaaagatcaa-tacaaggaggacgaatctaaaaaacatggtgactaggtcaagaacatgtcgccttagcaatcgta 21163374  T
Q  260 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaact 356  Q
    ||||||  |||||||||||| |||||  ||||||| |  ||||||| ||||  | |||||| ||||||  |||||  ||| ||||| |||| |||||    
T  21163375 tgagcagtcatgttcgcttgacgcctgacaaacttcacctcaaagttggaaaataaagctagcatagacttaataaaagagactataacattaaact 21163471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 33583008 - 33582849
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||| ||||||||||||||| | | | ||||||| ||||||| | |||||| ||||||| || |||||| |||||||||||||||||||   ||||||    
T  33583008 tacaagcaggacaaatctcaaatatacgatgactagcccaagaacaagccgccttagcaagagtgtgagcagccatgttcgcttgtcgcct---aaactt 33582912  T
Q  295 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 357  Q
    ||  |||||||  | |||| || |||| |||||  |||||  |||||||| ||||| ||||||    
T  33582911 tacctcaaagttaggatgtaaaactaaaatagacttaataagagaaactaagacatgaaactc 33582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 51259422 - 51259554
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| |||| |||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  51259422 ggtgactagcccaaaaataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 51259521  T
Q  322 catagaaataatattagaaactatgacataaaa 354  Q
    |  | |||||||| ||||||| || ||||||||    
T  51259522 ctgaaaaataatactagaaacaataacataaaa 51259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 56065927 - 56065807
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||  ||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| |||    
T  56065927 ggtgactagcccaaatataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataa 56065828  T
Q  322 catagaaataatattagaaac 342  Q
    |  | ||||||||||||||||    
T  56065827 ctgaaaaataatattagaaac 56065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 39251572 - 39251662
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcct 285  Q
    ||||||||||||||||||||||||||||| | |||| ||||||| ||||  |||||||||  ||||||||| ||| |||| |||| |||||    
T  39251572 tacaaggaggacaaatctcaaaaacatggcgtctaggccaagaacatgctaccctagcaatcgtatgagcagccacgttcacttgacgcct 39251662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 49951605 - 49951487
Alignment:
Q  224 tgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaaca 323  Q
    ||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||     
T  49951605 tgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataact 49951506  T
Q  324 tagaaataatattagaaac 342  Q
     | |||||||| |||||||    
T  49951505 gataaataatactagaaac 49951487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 51734875 - 51734985
Alignment:
Q  232 ccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaata 331  Q
    ||||||| | ||||||||||| |  |||||||||||||||||| |||||| |||| ||||||| |  || |||| ||||||| ||| ||||| | |||||    
T  51734875 ccaagaacaggccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagataacagataaata 51734974  T
Q  332 atattagaaac 342  Q
    ||| |||||||    
T  51734975 atactagaaac 51734985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 37245745 - 37245865
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  37245745 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 37245844  T
Q  322 catagaaataatattagaaac 342  Q
    |  | |||||||| |||||||    
T  37245845 ctgataaataatactagaaac 37245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 32576942 - 32577013
Alignment:
Q  223 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||| ||||||| | || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  32576942 gtgactagcccaagaacaggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 32577013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 2065147 - 2065075
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| ||||  ||||||| |  ||||||||||||||||||| ||||| |||| |||||||    
T  2065147 ggtgactagcccaagaacatgctaccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 2065075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 41835196 - 41835324
Alignment:
Q  214 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 313  Q
    ||||| || |||||||| ||||||| | ||||||||| | |   |||||| ||||||||||||||||| |||| ||||||| || || || | |||||||    
T  41835196 aaaaatatagtgactagcccaagaacaggccgccctatctaaactatgaggaaccatgttcgcttgtctcctaacaaacttcatctcgaaattggaatgt 41835295  T
Q  314 gaagctaacatagaaataatattagaaac 342  Q
     ||| ||||  | |||||||| |||||||    
T  41835296 aaagataactgataaataatactagaaac 41835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 21321824 - 21321765
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtc 281  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||| |||||||||    
T  21321824 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgatcgcttgtc 21321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 29655581 - 29655688
Alignment:
Q  244 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaact 343  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| || || |||| | ||||| ||| || |  | |||||||| |||||||     
T  29655581 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagtggaaatgtaaagatagctgataaataatactagaaaca 29655680  T
Q  344 atgacata 351  Q
    || |||||    
T  29655681 ataacata 29655688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 28426442 - 28426405
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28426442 gtatgagcaaccatgttcgcttgtctcctaacaaactt 28426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 44936011 - 44936104
Alignment:
Q  258 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 351  Q
    ||||||||||||||||||||||||  ||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| || |||||    
T  44936011 tatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgtaaagataactgataaataataatagaaacaataacata 44936104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 49119328 - 49119365
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  49119328 gtatgagcaaccatgttcgcttgtctcctaacaaactt 49119365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 32378300 - 32378181
Alignment:
Q  160 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 259  Q
    |||||||||||||||| |  |||||| ||  | | |||| |||||| ||||||||||||||||| |||||| ||||||| |||||| | ||||||  |||    
T  32378300 aacttaactgatatcagtaattaaaatagtgtcaatacagggaggaaaaatctcaaaaacatggcgactaggccaagaacatgccgtcatagcaatcgta 32378201  T
Q  260 tgagcaaccatgttcgcttg 279  Q
    |||||| |||||||||||||    
T  32378200 tgagcagccatgttcgcttg 32378181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 12717830 - 12717743
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcg 282  Q
    |||||| |||| |||||||| |||||||||||||||| ||||||   |||||||| || |  |||||||||||||| |||||||||||    
T  12717830 tacaagtaggagaaatctcacaaacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcg 12717743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 12779054 - 12778967
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcg 282  Q
    |||||| |||| |||||||| |||||||||||||||| ||||||   |||||||| || |  |||||||||||||| |||||||||||    
T  12779054 tacaagtaggagaaatctcacaaacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcg 12778967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 4268393 - 4268329
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 286  Q
    ||||||||| ||||||| ||||||||||||  |  ||||||||||||||||||||||||| ||||    
T  4268393 ggtgactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctccta 4268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 22767166 - 22767238
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| |||||||| |||| |  ||||||||||||||||||| ||||| |||| |||||||    
T  22767166 ggtgactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 22767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 25731101 - 25731030
Alignment:
Q  223 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||| ||||||| | ||||||||||| |  |||||||||||||||||||||| || |||| |||||||    
T  25731101 gtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaactt 25731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 20205239 - 20205177
Alignment:
Q  232 ccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  20205239 ccaagaataggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 20205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 23075126 - 23075054
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||||| ||||||| ||| || |||||| |   |||||||||||||||||||||||| |||| |||||||    
T  23075126 ggtgactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaactt 23075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 26597386 - 26597482
Alignment:
Q  258 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaa 354  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||   | |||||||| ||||||| || ||||||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaa 26597482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 342
Target Start/End: Original strand, 31908324 - 31908409
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 342  Q
    ||||||||||||||||| | || ||| ||| ||||||| || ||||||| | ||||||||| ||||  | ||||||||||| ||||    
T  31908324 gtatgagcaaccatgtttgtttatcgactaacaaacttcatctcaaagttgaaatgtgaagataactgataaataatattataaac 31908409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 8388344 - 8388308
Alignment:
Q  258 tatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8388344 tatgagcaaccatgttcgcttgtctcctaacaaactt 8388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 11375415 - 11375487
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||| ||| ||||||| | ||||||||||| |  ||||||||||| ||||||||||||| | || |||||||    
T  11375415 ggtgaatagcccaagaacaggccgccctagctaaagtatgagcaactatgttcgcttgtctcttaacaaactt 11375487  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 25538218 - 25538056
Alignment:
Q  195 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    ||||||| || |||||||||||||||||| |||||| ||||||| |||||||| ||| |  |||||||||| ||||||||||| | |||||| |||| ||    
T  25538218 tacaaggggggcaaatctcaaaaacatggcgactaggccaagaacatgccgccttagaatttgtatgagcatccatgttcgctagacgcctaacaaattt 25538119  T
Q  295 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 357  Q
     |  ||| ||| ||||  | |||||| ||||||| |||||  ||| ||||| |||| ||||||    
T  25538118 cacctcagagttggaaaataaagctagcatagaattaatagaagagactataacattaaactc 25538056  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 88853 - 88753
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| || |  |||||| | ||  |||| ||||||| |||||||    
T  88853 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgtaaagctaa 88754  T
Q  322 c 322  Q
    |    
T  88753 c 88753  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 34695797 - 34695869
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||| || ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34695797 ggtgacaagcccaagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34695869  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 34718209 - 34718281
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 294  Q
    |||||| || ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34718209 ggtgacaagcccaagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34718281  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 9710214 - 9710129
Alignment:
Q  257 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 342  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9710214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 9710129  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 14827373 - 14827315
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgt 280  Q
    ||||||||| ||||||||||| ||||||||  |  ||||||||||||||||||| ||||    
T  14827373 ggtgactagcccaagaatatgtcgccctagataaagtatgagcaaccatgttcgtttgt 14827315  T

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Target: scaffold0446 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 484 - 364
Alignment:
Q  222 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 321  Q
    ||||||||| ||||  ||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| |||    
T  484 ggtgactagcccaaatataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataa 385  T
Q  322 catagaaataatattagaaac 342  Q
    |  | ||||||||||||||||    
T  384 ctgaaaaataatattagaaac 364  T

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