View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_36 (Length: 431)
Name: NF1836_high_36
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 24907604 - 24908021
Alignment:
| Q |
1 |
gcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagattcatcataatgaatttaacccatgattccctttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24907604 |
gcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaatataagaaataagattcatcataatgaat------catgattccctttg |
24907697 |
T |
|
| Q |
101 |
gaaccacatgtatcctaacaactaaatgataaatacatcatataccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatc |
200 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907698 |
gaaccacatgtatcctaataactaaacgataaatacatcatataccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatc |
24907797 |
T |
|
| Q |
201 |
tctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907798 |
tctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattca |
24907897 |
T |
|
| Q |
301 |
aagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907898 |
aagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaac |
24907997 |
T |
|
| Q |
401 |
ttgtttcatggttggtctgtgctg |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
24907998 |
ttgtttcatggttggtctgtgctg |
24908021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 24889897 - 24890303
Alignment:
| Q |
1 |
gcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagattcatcataatgaatttaacccatgattccctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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|
| T |
24889897 |
gcaataacagaagtaaatatatgaacatttattcaatgtagtaccccacaacataagaaataagattcatcataatatattta-cccattattccctttg |
24889995 |
T |
|
| Q |
101 |
gaaccacatgtatcctaacaactaaat-gataaatacatcatataccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacat |
199 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||| |||||| || ||| | ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24889996 |
gaaccacatgtatcctaacaacaaaaaagataaatacatcacataccaaaagtatgaacccaacatcatttgcaaatagtaaccatcatctaggaaacat |
24890095 |
T |
|
| Q |
200 |
ctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24890096 |
ctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattttcatattttttgtgcttgattacttgagatgacgatgacatctcattc |
24890195 |
T |
|
| Q |
300 |
aaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaa |
399 |
Q |
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||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||| |
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|
| T |
24890196 |
aaagaaccactcgtctttgcggaggcattctatttgtatattccatgctcagtcaatgccttctccata--atgaacttgtttggaaagcatttgtagaa |
24890293 |
T |
|
| Q |
400 |
cttgtttcat |
409 |
Q |
| |
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| |||||||| |
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|
| T |
24890294 |
catgtttcat |
24890303 |
T |
|
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