View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_42 (Length: 413)
Name: NF1836_high_42
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 17754125 - 17754522
Alignment:
| Q |
1 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754125 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
17754224 |
T |
|
| Q |
101 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||| |
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| T |
17754225 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataact |
17754324 |
T |
|
| Q |
201 |
ctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17754325 |
ctggatcaccattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtccagttgaaggtaatgtcacgcgatgcaaaatatgctt |
17754424 |
T |
|
| Q |
301 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggccttcgtatgagtgttggtttcttccctatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17754425 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggccttcgtatgagtgtaggtttcttccctatg |
17754522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 17763112 - 17763509
Alignment:
| Q |
1 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763112 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
17763211 |
T |
|
| Q |
101 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||| |
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| T |
17763212 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacaggttgttagatagttcttcaaagattggggacagcaataact |
17763311 |
T |
|
| Q |
201 |
ctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17763312 |
ctggatcaccattttcggaagaagtggtagcaaatggacatatgatgagtcgtgcctcaagtccagttgaaggtaatgtcacgcgatgcaaaatatgctt |
17763411 |
T |
|
| Q |
301 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggccttcgtatgagtgttggtttcttccctatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17763412 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggccttcgtatgagtgtaggtttcttccctatg |
17763509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 17740141 - 17740538
Alignment:
| Q |
1 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
17740141 |
atccttgcaggtaaaaggatctgatgtcaatgaagatgaggacgttgacattgtgacagtcgagaaggatcctaatttcagcgactctgatatgtctgag |
17740240 |
T |
|
| Q |
101 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataact |
200 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| | | |||||||||| |||||| |||||||||| |||||||| |
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| T |
17740241 |
gaagagctacgttatctaccagtatctcccattcccgatgttcctgaacaggaagacaggcttttagatagttcttcaaagattggggacagcaataact |
17740340 |
T |
|
| Q |
201 |
ctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgctt |
300 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
17740341 |
ctggatcaccattttcagaagaagtggtagcaaatggacacatgatgagtcatgcctcaagtccacttgaaggtaatgtcacaccatgcaaaatatgctt |
17740440 |
T |
|
| Q |
301 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggccttcgtatgagtgttggtttcttccctatgct |
400 |
Q |
| |
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||||| | |||||||||||| ||||| || |||| ||| || || ||| ||||| | ||||| ||||||| ||||||| | ||||||||||| ||||| |
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| T |
17740441 |
gtaacggagtattttcattcttaagaatcccaatgttttaattgaactgttgaaacactttgtcaggcctt--tatgagtttaggtttcttccccatgct |
17740538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 15736076 - 15736446
Alignment:
| Q |
1 |
atccttgcaggtaaaagtatctgatgtcaatgaagatgaggacgttgacattataacagtcgagaaggatcctgctttcagcgactctgatatgtccgag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15736076 |
atccttgcaggtaaaaggatctgatgtcaatgaagacgaggacgttgacattgagacagtagagaaggatcctgctttcagcgactctgatatgtccgag |
15736175 |
T |
|
| Q |
101 |
gaagagctatgttatctaccggtatctcccattcccgatgttcctgaacaggatgacatgttgttagatagtttttcaaatattggggacaacaataact |
200 |
Q |
| |
|
||||||||||||||||| || | ||||||| | |||||||||||||||||| |||| ||| ||||| |||| |||||| |||||||||| |||||||| |
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| T |
15736176 |
gaagagctatgttatctgccagcatctccctgccgcgatgttcctgaacaggaagacaggtttttagaaagttcttcaaagattggggacagcaataact |
15736275 |
T |
|
| Q |
201 |
ctggatcaccattttcggaagaagtggtagcaaatggacatacgatgagtcatgcgtcaagtccagttgaaggtaatgtcacgccatgcaaaatatgctt |
300 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
15736276 |
ccggatcaccattttccgaagaagtggtagcaaatggacatatgatgagtcatgcctcaagtccagttgaaggtaatgtcatgccattcaaaatatgctt |
15736375 |
T |
|
| Q |
301 |
gtaacagtgtattttcattcctaagattcacaatttttaaactgtactattgaataagtttgtgaggcctt |
371 |
Q |
| |
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|||||| ||||||||||| ||||| || ||||||| || || ||| ||||| | ||||||||||||| |
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|
| T |
15736376 |
gtaacatattattttcattcttaagaatccgaatttttcaattgaactgttgaaccactttgtgaggcctt |
15736446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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