View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_48 (Length: 384)
Name: NF1836_high_48
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 126 - 368
Target Start/End: Original strand, 52333953 - 52334195
Alignment:
| Q |
126 |
ttttggcgtaactaaccgttaatgatcctgatcctttgggtgatactgtgaaaaggatagaggagcctggtgggaacgtttgatctttgaaaacagaaac |
225 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
52333953 |
ttttggtgttactaaccgttaatgatcctaatcctttgggtgatactgtgaaaaggatagaggagcctggtggaaatgtttcatctttgaaaacagaaac |
52334052 |
T |
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| Q |
226 |
aaacttgtctattgctttagcttcttcatctgtataaatcccaagagacttccaaatggctacacaattttcagacactttctctgaatattggtgtccc |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52334053 |
aaacttgtctattgctttagcttcttcatcagtataaatcccaagagacttccaaatggctacacaattttcagacactttctctgaatattggtgtccc |
52334152 |
T |
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| Q |
326 |
gtcaacggcaagatcattgtcacccgcatgaatttctcaaatg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52334153 |
gtcaacggcaagatcattgtcacccgcatgaatttctcaaatg |
52334195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 126 - 368
Target Start/End: Original strand, 52339338 - 52339580
Alignment:
| Q |
126 |
ttttggcgtaactaaccgttaatgatcctgatcctttgggtgatactgtgaaaaggatagaggagcctggtgggaacgtttgatctttgaaaacagaaac |
225 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
52339338 |
ttttggtgttactaaccgttaatgatcctaatcctttgggtgatactgtgaaaaggatagaggagcctggtggaaatgtttcatctttgaaaacagaaac |
52339437 |
T |
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| Q |
226 |
aaacttgtctattgctttagcttcttcatctgtataaatcccaagagacttccaaatggctacacaattttcagacactttctctgaatattggtgtccc |
325 |
Q |
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| T |
52339438 |
aaacttttttattgctttggcttcttcattagtataaatcccaagagacttccaaatggctacacaattttcagacactttgtttgagtattcttgccct |
52339537 |
T |
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| Q |
326 |
gtcaacggcaagatcattgtcacccgcatgaatttctcaaatg |
368 |
Q |
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| T |
52339538 |
gtcaatggtctgatcattgtcacccgcataaatttctcaaatg |
52339580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 9180379 - 9180739
Alignment:
| Q |
1 |
aaaaattgtcatttaaaatcctaattcaatccacccactaagacttcaggtattttttaaaagagcatagctatttcaaaaacagtaaatacaaatgcag |
100 |
Q |
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|||||||||| |||||||||||||| |||| ||||| |||||| | | | |||||| ||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
9180379 |
aaaaattgtcctttaaaatcctaatccaattcacccgctaagagtaccgatattttataaaagagcatagctatttcaaaaacaacaaataaaaatgcag |
9180478 |
T |
|
| Q |
101 |
aacatggcataagttagactaaattttttggcgtaactaaccgttaatgatcctgatcctttgggtgatactgtgaaaaggatagaggagcctggtggga |
200 |
Q |
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||||| ||||| | |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9180479 |
aacat---ataag--actctaaattttt--gtgttactaaccgttaatgatcctgatcctttgggtgatactgtgaaaaggatagaggagcctggtggaa |
9180571 |
T |
|
| Q |
201 |
acgtttgatctttgaaaacagaaacaaacttgtctattgctttagcttcttcatctgtataaatcccaagagacttccaaatggctacacaattttcaga |
300 |
Q |
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| |||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9180572 |
atgtttcatctttgaaaacagaaacaaacttgtttattgctttgatttcttcattagtataaatcccaagagacttccaaatggctacacaattttcaga |
9180671 |
T |
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| Q |
301 |
cactttctctgaatattggtgtcccgtcaacggcaagatcattgtcacccgcatgaatttctcaaatg |
368 |
Q |
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|||||| | ||| |||| || || ||||| || |||||||||||||||||| ||||||||||||| |
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| T |
9180672 |
cactttgtttgagtattcttgccctgtcaatggtctgatcattgtcacccgcataaatttctcaaatg |
9180739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28099720 - 28099680
Alignment:
| Q |
1 |
aaaaattgtcatttaaaatcctaattcaatccacccactaa |
41 |
Q |
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|||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
28099720 |
aaaaattgtcttttaaaatcctaattcaatacaccccctaa |
28099680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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