View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_57 (Length: 339)

Name: NF1836_high_57
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_57
NF1836_high_57
[»] chr1 (14 HSPs)
chr1 (212-322)||(12885647-12885757)
chr1 (17-142)||(12885457-12885582)
chr1 (23-142)||(12955999-12956118)
chr1 (17-142)||(12950243-12950368)
chr1 (29-142)||(12914627-12914740)
chr1 (19-135)||(12921937-12922053)
chr1 (27-142)||(12942585-12942700)
chr1 (212-291)||(12942445-12942524)
chr1 (212-291)||(12950103-12950182)
chr1 (212-308)||(12922143-12922239)
chr1 (212-291)||(12955862-12955941)
chr1 (17-142)||(12992219-12992344)
chr1 (29-133)||(12893758-12893862)
chr1 (223-321)||(12915013-12915114)
[»] chr8 (2 HSPs)
chr8 (26-111)||(14073726-14073811)
chr8 (63-111)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12885647 - 12885757
Alignment:
Q  212 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatggta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885647 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatggta 12885746  T
Q  312 gtatctaatct 322  Q
    |||||||||||    
T  12885747 gtatctaatct 12885757  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 12885457 - 12885582
Alignment:
Q  17 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  12885457 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcattacttccttttttcataaactccttt 12885556  T
Q  117 ggtacactctgcaaatacaaataaaa 142  Q
    ||||||||||||||||||||| ||||    
T  12885557 ggtacactctgcaaatacaaacaaaa 12885582  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 12956118 - 12955999
Alignment:
Q  23 actctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtaca 122  Q
    |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||    
T  12956118 actctcgtaatagttcacttttacgaaccatgactttctccccattttcaactccacaatattttcatgacatcctcttttcataaactcctttggtaca 12956019  T
Q  123 ctctgcaaatacaaataaaa 142  Q
    ||||||||||||||| ||||    
T  12956018 ctctgcaaatacaaacaaaa 12955999  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 12950368 - 12950243
Alignment:
Q  17 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 116  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||   |||||||||||||||||    
T  12950368 atgaatactctcataataattgacttttacaaaccatgactttctccccatttttaactccacaatattttcattacatcctcttttcataaactccttt 12950269  T
Q  117 ggtacactctgcaaatacaaataaaa 142  Q
    || |||| ||||||||||||| ||||    
T  12950268 ggcacaccctgcaaatacaaacaaaa 12950243  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 12914627 - 12914740
Alignment:
Q  29 ataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactctgc 128  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||| ||||    
T  12914627 ataaaaattgacttttacaaaccatgactttctccccattttcaactccacaatattttcattacatccttttttcataaactcctttggtacacactgc 12914726  T
Q  129 aaatacaaataaaa 142  Q
    | ||||||| ||||    
T  12914727 agatacaaacaaaa 12914740  T

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Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 12921937 - 12922053
Alignment:
Q  19 gaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttgg 118  Q
    |||||||||| |||||||||||||||||||||||||||| ||  |||| ||||||||||| |||||||||||||||||     |||||||||||||||||    
T  12921937 gaacactctcgtaataattgacttttacgaaccatgactgtccccccactttcaactccaaaatattttcatgacttcctccgttcataaactcctttgg 12922036  T
Q  119 tacactctgcaaataca 135  Q
    |||| ||||||||||||    
T  12922037 tacagtctgcaaataca 12922053  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 12942700 - 12942585
Alignment:
Q  27 tcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactct 126  Q
    |||||||| || ||||||||| ||||||||||||  ||||||||||| ||||| |||||||||| || ||   |||||||||||||||||||||||||||    
T  12942700 tcataatagttcacttttacgtaccatgactttccccccattttcaattccacgatattttcattacatccccttttcataaactcctttggtacactct 12942601  T
Q  127 gcaaatacaaataaaa 142  Q
    ||||||||||| ||||    
T  12942600 gcaaatacaaacaaaa 12942585  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 12942524 - 12942445
Alignment:
Q  212 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 291  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  12942524 gtaattaatcctaccggggcattgttcttcaccataaccttgaatgtgttatgcttcatcacatcaggaccttctgtaca 12942445  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 12950182 - 12950103
Alignment:
Q  212 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 291  Q
    ||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  12950182 gtaattaatcctaccggggatgtgttcttcaccaaaaccttaaatgtgttatgcttcatcacattaggaccttctgtaca 12950103  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 12922143 - 12922239
Alignment:
Q  212 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatg 308  Q
    |||||||||||||||||| || | |||||||||| |||||| || |||||||||| | ||  ||||||||||||||||||| |||||||||||||||    
T  12922143 gtaattaatcctaccggaactctattcttcaccataaccttgaacgtgttatgctccttccaatcacgaccttctgtacatgcataaacacaaaatg 12922239  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 12955941 - 12955862
Alignment:
Q  212 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 291  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||| |   |||||||||||||| |||||||||||||    
T  12955941 gtaattaatcctaccggagctgtgttcttcaccaaaaccttgaatgtatatggcttcatcacatcaggaccttctgtaca 12955862  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 12992344 - 12992219
Alignment:
Q  17 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 116  Q
    ||||| ||| ||||||||||| ||||||||  |||||||   ||  |||||||||||||||| ||  |||||||||||||   |||||||||||||||||    
T  12992344 atgaatactatcataataattcacttttacagaccatgatcgtccccccattttcaactccagaaagttttcatgacttcctcttttcataaactccttt 12992245  T
Q  117 ggtacactctgcaaatacaaataaaa 142  Q
    || ||| |||||||||||||| ||||    
T  12992244 ggaacattctgcaaatacaaacaaaa 12992219  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 12893758 - 12893862
Alignment:
Q  29 ataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactctgc 128  Q
    ||||||||| ||||||| ||||||||| | | | || |||||||||||||||| ||||||||||| ||   |||||||||| || |||||||||  ||||    
T  12893758 ataataattcacttttatgaaccatgattgtatccctattttcaactccacaagattttcatgacatcctcttttcataaattcatttggtacatcctgc 12893857  T
Q  129 aaata 133  Q
    |||||    
T  12893858 aaata 12893862  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 12915013 - 12915114
Alignment:
Q  223 taccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgac---cttctgtacatacataaacacaaaatggtagtatctaa 319  Q
    |||||| | |||||||||||  |||||||| ||||| ||||||| | ||||||||||||   ||||||||||| |||||||||||||||  |||| ||||    
T  12915013 taccggggttttgttcttcaagaaaaccttgaatgtcttatgctccttcacatcacgaccttcttctgtacatgcataaacacaaaatgacagtacctaa 12915112  T
Q  320 tc 321  Q
    ||    
T  12915113 tc 12915114  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 14073811 - 14073726
Alignment:
Q  26 ctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaact 111  Q
    ||||||| | |||||||||||||||||||| | ||   |||||||||||| |||||||||||||| |  ||  |||||||||||||    
T  14073811 ctcataaaatttgacttttacgaaccatgattatccctccattttcaactacacaatattttcataagatccctttttcataaact 14073726  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 14069426 - 14069378
Alignment:
Q  63 cccattttcaactccacaatattttcatgacttctatttttcataaact 111  Q
    |||||||| |||||||||||||||||||||| ||   ||||||||||||    
T  14069426 cccattttgaactccacaatattttcatgacatccccttttcataaact 14069378  T

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