View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_6 (Length: 701)

Name: NF1836_high_6
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_6
NF1836_high_6
[»] chr7 (14 HSPs)
chr7 (301-614)||(8354940-8355253)
chr7 (1-200)||(8355261-8355461)
chr7 (1-200)||(8482881-8483076)
chr7 (1-234)||(8349178-8349408)
chr7 (299-485)||(8349004-8349184)
chr7 (614-690)||(8354388-8354464)
chr7 (502-605)||(8410644-8410743)
chr7 (379-464)||(8410745-8410830)
chr7 (124-197)||(8480715-8480788)
chr7 (554-614)||(8348906-8348966)
chr7 (124-197)||(8350325-8350398)
chr7 (11-70)||(8432701-8432760)
chr7 (395-440)||(8361502-8361547)
chr7 (625-693)||(23944090-23944158)
[»] chr4 (1 HSPs)
chr4 (379-561)||(51650264-51650442)
[»] chr6 (2 HSPs)
chr6 (614-684)||(7556118-7556188)
chr6 (634-688)||(32047197-32047251)
[»] chr5 (8 HSPs)
chr5 (625-693)||(41264387-41264455)
chr5 (634-684)||(2243318-2243368)
chr5 (634-691)||(22780339-22780396)
chr5 (634-690)||(7113610-7113666)
chr5 (634-693)||(7215461-7215520)
chr5 (625-694)||(973125-973194)
chr5 (625-670)||(37077666-37077711)
chr5 (646-694)||(40483716-40483764)
[»] chr3 (2 HSPs)
chr3 (146-232)||(1169539-1169626)
chr3 (634-681)||(54437660-54437707)
[»] chr1 (7 HSPs)
chr1 (634-689)||(3231981-3232036)
chr1 (614-693)||(15321044-15321123)
chr1 (634-681)||(46080994-46081041)
chr1 (635-693)||(3367806-3367864)
chr1 (634-684)||(52432684-52432734)
chr1 (652-693)||(12145008-12145049)
chr1 (641-693)||(7104295-7104347)
[»] chr8 (2 HSPs)
chr8 (634-693)||(32166628-32166687)
chr8 (641-693)||(29969127-29969179)
[»] chr2 (2 HSPs)
chr2 (634-693)||(38576930-38576989)
chr2 (634-684)||(16576271-16576321)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 301 - 614
Target Start/End: Complemental strand, 8355253 - 8354940
Alignment:
Q  301 ttcattctcctaggataaggctttgtcttggaatatgtagtgcttatggcaaatttgtggttgagttgtttgttgaagttgaaccatttactgtatcttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355253 ttcattctcctaggataaggctttgtcttggaatatgtagtgcttatggcaaatttgtggttgagttgtttgttgaagttgaaccatttactgtatcttt 8355154  T
Q  401 ccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcaccacctttcttccgaactcttccatgacaaggaaggagagtttaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8355153 ccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttcttccgaactcttccatgacaaggaaggagagtttaca 8355054  T
Q  501 tccacttctcaatttccgaggaattcacaattacaagggaaaagtatctatctatttcttggctactcaatagctttgctagttttggctggtttttact 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8355053 tccacttctcaatttccgaggaattcacaattacaagggaaaagtatctatctatttcttggctactcaatagttttgctagttttggctggtttttact 8354954  T
Q  601 tattattgcctact 614  Q
    ||||||||| ||||    
T  8354953 tattattgcttact 8354940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8355461 - 8355261
Alignment:
Q  1 gctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatc-aaaccctcaa 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8355461 gctgggaatgtttcactgtctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatcgaaaccctcaa 8355362  T
Q  100 attttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccattgacata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8355361 attttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacata 8355262  T
Q  200 t 200  Q
    |    
T  8355261 t 8355261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8482881 - 8483076
Alignment:
Q  1 gctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatcaaaccctcaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||     |||||||||    
T  8482881 gctgggaatgtttcactgtctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattga----gttataagtaccctcaaa 8482976  T
Q  101 ttttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccattgacatat 200  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| || ||||||||||||  ||||||||||||| |||||||    
T  8482977 ttttagaacataataattgaatgagttattctttccagctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacaccatggacatat 8483076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 8349408 - 8349178
Alignment:
Q  1 gctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattga---ataagttaatcaaaccctc 97  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| ||||||   ||||||       ||||||    
T  8349408 gctgggaatgtttcactgtctttgtcatcttagtatctaatccaacattggaaaaatattggaaatcacatgaattgagctataagt-------accctc 8349316  T
Q  98 aaattttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccattgaca 197  Q
    |||||||| |||||||||||||||| |||||||||||||||||   ||||||||||||||| || |||||||||||| ||||||||||||||||| || |    
T  8349315 aaattttataacataataattggatgagttattctttccagctttgggtagacatcgattgtagtcgctgaatgcatttccatctgccacaccatggata 8349216  T
Q  198 tat-ttcgtgcatattcagcattattacttattttcat 234  Q
    ||| |||||||||||||| |||||||||| ||||||||    
T  8349215 tatcttcgtgcatattcaacattattactcattttcat 8349178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 299 - 485
Target Start/End: Complemental strand, 8349184 - 8349004
Alignment:
Q  299 ttttcattctcctaggataaggctttgtcttggaatatgtagtgcttatggcaaatttgtggttgagttgtttgttgaagttgaaccatttactgtatct 398  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       | ||||||||||||| ||||    
T  8349184 ttttcattctcccgggataaggctttgtcttggaatatgtagtgcttacggcaaatttgtggttgagttgttt------ttagaaccatttactgcatct 8349091  T
Q  399 ttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcaccacctttcttccgaactcttccatgacaag 485  Q
    |||| || ||| |||||||| ||  ||||||| |||||||||||||||||||||  |||||||||| || || |||||||| |||||    
T  8349090 ttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattgccacctttctaccaaattcttccattacaag 8349004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 614 - 690
Target Start/End: Complemental strand, 8354464 - 8354388
Alignment:
Q  614 ttatgacaacaagttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcat 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8354464 ttatgacaacaagttgtcagtttcatctcaagaacattaaacttctacatatccttcattcaacatgtgatattcat 8354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 502 - 605
Target Start/End: Complemental strand, 8410743 - 8410644
Alignment:
Q  502 ccacttctcaatttccgaggaattcacaattacaagggaaaagtatctatctatttcttggctactcaatagctttgctagttttggctggtttttactt 601  Q
    ||||||||| | |||||||||||||||||||||||| |||| ||||||||    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8410743 ccacttctcgagttccgaggaattcacaattacaagagaaaggtatctat----ttcttggctactctataactttgctagttttggctggtttttactt 8410648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 8410830 - 8410745
Alignment:
Q  379 ttgaaccatttactgtatctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcaccacctttct 464  Q
    ||||||||||||||| | ||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||| ||||||||||    
T  8410830 ttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtgtgaaattcctcaatctccacctttct 8410745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 8480715 - 8480788
Alignment:
Q  124 agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccattgaca 197  Q
    ||||||||||||||||||||| ||||||| |||||||| | || |||| | |||||||||||||||||||||||    
T  8480715 agttattctttccagctccagctagacatagattggagtctcttaatgaagctccatctgccacaccattgaca 8480788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 8348966 - 8348906
Alignment:
Q  554 atttcttggctactcaatagctttgctagttttggctggtttttacttattattgcctact 614  Q
    |||||||||||| || | ||||||||||||||||| |||||||||||||||||||||||||    
T  8348966 atttcttggctagtctacagctttgctagttttggatggtttttacttattattgcctact 8348906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 8350398 - 8350325
Alignment:
Q  124 agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccattgaca 197  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||  | |||||||||||| ||||| ||||    
T  8350398 agttattctttccagctccagctggacatcgattggagtcgatgaataaagctccatctgccaaaccatggaca 8350325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 8432760 - 8432701
Alignment:
Q  11 tttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcaca 70  Q
    |||||||| |||||||||| ||||||  |||| ||||||  |||||||||||||||||||    
T  8432760 tttcactgcctttgtcatcctataattgaatctaacattaaaaacatattggaaatcaca 8432701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 8361547 - 8361502
Alignment:
Q  395 atctttccattttcctactctcaagaagacaattgggaatgatgtg 440  Q
    ||||||||||| |||||||||||| ||| |||||||||||| ||||    
T  8361547 atctttccattgtcctactctcaacaagtcaattgggaatggtgtg 8361502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 693
Target Start/End: Original strand, 23944090 - 23944158
Alignment:
Q  625 agttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    ||||| || |||||||| |||||||| |||||||| | | || ||||||||||||||||| | ||||||    
T  23944090 agttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 379 - 561
Target Start/End: Original strand, 51650264 - 51650442
Alignment:
Q  379 ttgaaccatttactgtatctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcaccacctttcttccgaactcttcca 478  Q
    ||||||||||||||| |||||||| |  |||||||||||| ||| ||||||| |||| |||| ||||||| |||| |||||||||| |  ||||||||||    
T  51650264 ttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgccacctttctgctaaactcttcca 51650363  T
Q  479 tgacaaggaaggagagtttacatccacttct-caatttccgaggaattcacaattacaagggaaaagtatctatctatttcttg 561  Q
    ||||    ||||||||||||||||||||| |  ||||||  | || ||||||  ||||||||||| ||||||||||||||||||    
T  51650364 tgac----aaggagagtttacatccacttttggaatttctca-gacttcacagctacaagggaaaggtatctatctatttcttg 51650442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 614 - 684
Target Start/End: Complemental strand, 7556188 - 7556118
Alignment:
Q  614 ttatgacaacaagttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgat 684  Q
    |||||||| | |||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||    
T  7556188 ttatgacagcgagttgtcattttcatctcaagaacattaaatttattcatatcattcattcaacatgtgat 7556118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 688
Target Start/End: Original strand, 32047197 - 32047251
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattc 688  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  32047197 tttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattc 32047251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 625 - 693
Target Start/End: Original strand, 41264387 - 41264455
Alignment:
Q  625 agttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||||| |||||||||||||||||||||||| | |||||  ||||||||||||||||| ||||||||    
T  41264387 agttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctc 41264455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 684
Target Start/End: Complemental strand, 2243368 - 2243318
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgat 684  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  2243368 tttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgat 2243318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 691
Target Start/End: Complemental strand, 22780396 - 22780339
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatc 691  Q
    ||||||||||| |||| ||||||||| |||||| ||||||||||||||||| ||||||    
T  22780396 tttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 690
Target Start/End: Complemental strand, 7113666 - 7113610
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcat 690  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||| |||||| |||||    
T  7113666 tttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcat 7113610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 693
Target Start/End: Complemental strand, 7215520 - 7215461
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||| ||||||||||||||||| | |||||  ||||||||||||||||| ||||||||    
T  7215520 tttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctc 7215461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 694
Target Start/End: Original strand, 973125 - 973194
Alignment:
Q  625 agttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctca 694  Q
    |||| ||| ||| ||||||| ||||||||| |||| ||| || || |||||||||||||| |||||||||    
T  973125 agttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctca 973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 670
Target Start/End: Original strand, 37077666 - 37077711
Alignment:
Q  625 agttgtcagtttcatctcaagaacattaaacttctacatatcattc 670  Q
    |||| ||| |||||||||||||||||||||||||| ||| ||||||    
T  37077666 agttatcattttcatctcaagaacattaaacttcttcatctcattc 37077711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 646 - 694
Target Start/End: Original strand, 40483716 - 40483764
Alignment:
Q  646 aacattaaacttctacatatcattcattcaacatgtgatattcatctca 694  Q
    ||||| |||||||| ||| ||| |||||||||||||||| |||||||||    
T  40483716 aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctca 40483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 1169539 - 1169626
Alignment:
Q  146 tagacatcgattggagacgctgaatgcatctccatctgccacaccattgacatat-ttcgtgcatattcagcattattacttattttc 232  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||| ||| | ||||||    
T  1169539 tagagatcgattggagcggctgaatgcatctccatctgccacaccctggacatatcttcgtgtatattcagcattgttattcattttc 1169626  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 54437660 - 54437707
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgt 681  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||||||    
T  54437660 tttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 634 - 689
Target Start/End: Original strand, 3231981 - 3232036
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattca 689  Q
    ||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||    
T  3231981 tttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattca 3232036  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 614 - 693
Target Start/End: Original strand, 15321044 - 15321123
Alignment:
Q  614 ttatgacaacaagttgtcagtttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||| ||||| |||||||| |||| |||||| ||||||||| || | |||||| |||||||||||||| || ||||||||    
T  15321044 ttattacaacgagttgtcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctc 15321123  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 46080994 - 46081041
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgt 681  Q
    |||||||||||||||||||||||||| ||| || |||| |||||||||    
T  46080994 tttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 693
Target Start/End: Original strand, 3367806 - 3367864
Alignment:
Q  635 ttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||||||||||||| ||| || | ||| |||||||||||||||||||| | ||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctc 3367864  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 684
Target Start/End: Original strand, 52432684 - 52432734
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgat 684  Q
    |||||||||||||||||||||||||| ||| || |||||| |||| |||||    
T  52432684 tttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgat 52432734  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 652 - 693
Target Start/End: Original strand, 12145008 - 12145049
Alignment:
Q  652 aaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||||| ||| |||||||||||||||||||| ||||||||    
T  12145008 aaacttcttcatctcattcattcaacatgtgattttcatctc 12145049  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 641 - 693
Target Start/End: Original strand, 7104295 - 7104347
Alignment:
Q  641 tcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    ||||||| |||||| |||| ||| || |||||||||||||| |||||||||||    
T  7104295 tcaagaatattaaatttcttcatctccttcattcaacatgtaatattcatctc 7104347  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 693
Target Start/End: Complemental strand, 32166687 - 32166628
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    ||||||||||||||||| |||||||| ||| || || ||||||||||| || ||||||||    
T  32166687 tttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 641 - 693
Target Start/End: Original strand, 29969127 - 29969179
Alignment:
Q  641 tcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||||||| |||||||| | |  | ||||||||||||||||||||||||||    
T  29969127 tcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctc 29969179  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 693
Target Start/End: Complemental strand, 38576989 - 38576930
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgatattcatctc 693  Q
    |||||||| |||||||||||| |||| ||| || ||||||||||||||||| | ||||||    
T  38576989 tttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 684
Target Start/End: Original strand, 16576271 - 16576321
Alignment:
Q  634 tttcatctcaagaacattaaacttctacatatcattcattcaacatgtgat 684  Q
    |||| |||||||||||| |||||||| ||| || |||||||||||||||||    
T  16576271 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 16576321  T

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