View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_60 (Length: 328)
Name: NF1836_high_60
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 29942725 - 29942426
Alignment:
| Q |
15 |
aacttctacagcgacaaaaacgtagaggaatttggtcaataaccacgctaagatagattagaaacgagggaaggaagagcgtagtgacagagagataata |
114 |
Q |
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| T |
29942725 |
aacttctacggcgacaaaaacgtagaggaatttggtcaataaccacgctaagatagattagaaacgagggaacgaagagcgtagtgacagagagataata |
29942626 |
T |
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| Q |
115 |
gtaaaaactgagcactaaatagatatgttgtcaaaatcataaaatcaatttcaggtttctatgtaggctgtacaata---------tgatgaattattca |
205 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29942625 |
gtaaaaactgagcactaaatagatatgttgtcgaaatcataaaatcaatttcaggtttctatgtaggctgtacaatatgacgaatgtgatgaattattca |
29942526 |
T |
|
| Q |
206 |
attgagttaaacataaggttgtcaactcgagtttttatatgaactcgtttcgcctagatggaatcgaattgtaaactgaaataatattaaaattattata |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29942525 |
gttgagttaaacataaggttgtcaactcgagtttttatatgaactcgttttgcctagatggaatcgaattgtaaactaaaataatattaaaattattata |
29942426 |
T |
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