View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_62 (Length: 320)
Name: NF1836_high_62
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 17753834 - 17754124
Alignment:
| Q |
19 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttacatctg |
118 |
Q |
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| T |
17753834 |
aaatccttgaagggcctaaggaagcccttattgatttagcatggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttatatctg |
17753933 |
T |
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| Q |
119 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753934 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
17754033 |
T |
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| Q |
219 |
aagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcat |
309 |
Q |
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| T |
17754034 |
aagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcat |
17754124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 17762821 - 17763111
Alignment:
| Q |
19 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttacatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17762821 |
aaatccttgaagggcctaaggaagcccttattgatttagcatggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttatatctg |
17762920 |
T |
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| Q |
119 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
218 |
Q |
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| T |
17762921 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
17763020 |
T |
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| Q |
219 |
aagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcat |
309 |
Q |
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| T |
17763021 |
aagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttcttttccattttatggtcttaaccaagttcat |
17763111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 17739680 - 17739931
Alignment:
| Q |
19 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttacatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
17739680 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacgtccaattgttgtgtctgtttctttgtgtggcatagtttatatctg |
17739779 |
T |
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| Q |
119 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739780 |
ggccaaagagtacattgagaactggagtgcttttgctcctgatttcaaagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
17739879 |
T |
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| Q |
219 |
aagcctgacactgataatgtatgtgaacgttatatggtcataggtcatatta |
270 |
Q |
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| T |
17739880 |
aatcctgacactgataatgtatgtgaacattatatggtcataggtcttatta |
17739931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 15735785 - 15736075
Alignment:
| Q |
19 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctattgttttgtctgtttctttgagtggcatagtttacatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||| ||||| |
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| T |
15735785 |
aaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacgtccaattgttgtatctgtttctttgagtggcatagtttatatctg |
15735884 |
T |
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| Q |
119 |
ggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
218 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15735885 |
ggccaaagattacattgagaactggagtgcttttgctcctgatttcaaagagatcgaggaaaatgaggagtatgtggagcgagaagatgaatttgatttg |
15735984 |
T |
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| Q |
219 |
aagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttcat |
309 |
Q |
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|| |||| |||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |
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| T |
15735985 |
aatactgagactgataaggtatgtgaacgttatatggtcatagtacttattattctttcattttccattttatggtctcaaccaagttcat |
15736075 |
T |
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