View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_66 (Length: 309)
Name: NF1836_high_66
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 853375 - 853674
Alignment:
| Q |
1 |
ccacatcaatgaccgttggaccgagatcatatagagtttaaaattttaaaaaatttaatctcaatcaaacatttatagatgagtttgactatatgaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
853375 |
ccacatcaatgaccgttggaccgagatcatatagagtttaaaatttaaaaaaatttaatctcaatcaaacatttatagatgtgtttgactatatgaattt |
853474 |
T |
|
| Q |
101 |
gatcatgacggaacctgatttacttacctatcaggagcacacagaccaagacattaaaaagattggtgttaaccagggattcaaccaaagctctcaaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
853475 |
gatcatgacggaacctgatttacttacctatcaggagcaca--gaccaagacattaaaaagattggtgttaacgagggattcaaccaaagctctcaaacc |
853572 |
T |
|
| Q |
201 |
aggagcatcaataccatcatcgtttgttatcagaattgttcctagcttaccctcatcatccatctccaaagttgctgtatcacttgtcatcaacacctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
853573 |
aggagcatcaataccatcatcgtttgttatcagaattgttcctagcttaccctcatcatccatctccaaagttgctgtatcacttgtcatcaacacctat |
853672 |
T |
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