View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_67 (Length: 302)
Name: NF1836_high_67
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 47 - 295
Target Start/End: Original strand, 47426489 - 47426737
Alignment:
| Q |
47 |
atggtatacacacgtgctatccgtttacatgctgactggaaattattt-ggattgagaccctagctagctagcaagctctatgacttcatttgccacttt |
145 |
Q |
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| T |
47426489 |
atggtatacacaagtgctatccgttcacaagctgactggaaattattttggattgagaccctagctagctagcaagctctatgacttcatttgccacttt |
47426588 |
T |
|
| Q |
146 |
gtttcttgtgcacttctgtaaacaacctgggaatttcaggattttattttcatgtgttttacaaatggaggtctagatagcattgatgagatgctccaca |
245 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47426589 |
gtttcttgtgcacttctgtaaacaacctgg-aatttcaggattttattttcatgtgttttacaaatggaggtcaagatagcattgatgagatgctccaca |
47426687 |
T |
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| Q |
246 |
aaacaatccttcatacaccaatgttgatgtcaccaacttcctgatgatgt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47426688 |
aaacaatccttcatacaccaatgttgatgtcaccaacttcctgatgatgt |
47426737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 50434097 - 50434147
Alignment:
| Q |
119 |
aagctctatgacttcatttgccactttgtttcttgtgcacttctgtaaaca |
169 |
Q |
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| T |
50434097 |
aagctctatgacttcatttgctactctgtttcttgtgcacttctttaaaca |
50434147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 22893926 - 22893890
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagtcttatccc |
46 |
Q |
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| T |
22893926 |
aatgtcaccaaccacaatgtcacccaagtattatccc |
22893890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 15928116 - 15928073
Alignment:
| Q |
2 |
tggttgataatgtcaccaaccacaatttcacccaagtcttatcc |
45 |
Q |
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||||||||||||||||||| |||||| |||||||||| |||||| |
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| T |
15928116 |
tggttgataatgtcaccaatcacaatgtcacccaagtattatcc |
15928073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 10449482 - 10449446
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagtcttatccc |
46 |
Q |
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|
| T |
10449482 |
aatgtcaccaaccacaatgtcacccaagtattatccc |
10449446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 28045451 - 28045487
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagtcttatccc |
46 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||| |
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|
| T |
28045451 |
aatgtcaccaaccacaatgtcacccaagtattatccc |
28045487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 2543770 - 2543734
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagtcttatccc |
46 |
Q |
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|||||||||||||||||| |||||||||| ||||||| |
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|
| T |
2543770 |
aatgtcaccaaccacaatgtcacccaagtattatccc |
2543734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 53261222 - 53261250
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagt |
38 |
Q |
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| T |
53261222 |
aatgtcaccaaccacaatttcacccaagt |
53261250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 13421813 - 13421845
Alignment:
| Q |
10 |
aatgtcaccaaccacaatttcacccaagtctta |
42 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
13421813 |
aatgtcaccaaccacaatgtcacccaagtctta |
13421845 |
T |
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