View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_69 (Length: 299)
Name: NF1836_high_69
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 34018628 - 34018346
Alignment:
| Q |
1 |
ttaagaaccagaagaagatggtgagttcaaacgttattcacttgtcttta-aaacattcatttcatgattaactaatagaagcgaatgccactgaattct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018628 |
ttaagaaccagaagaagatggtgagttcaaacgttattcacttgtcttttgaaacattcatttcatgattaactaatagaagcgaatgccactgaattct |
34018529 |
T |
|
| Q |
100 |
gatcatgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018528 |
gatcatgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctt |
34018429 |
T |
|
| Q |
200 |
tcaaatgatgtgatttaaaatgtcacctctatgttccacacctagaaattattttattatagtaaaattgctatattgtatat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34018428 |
tcaaatgatgtgatttaaaatgtcacctctatgttccacacctagaaattattttattattgtaaaattgctatattgtatat |
34018346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 33155987 - 33155710
Alignment:
| Q |
1 |
ttaagaaccagaagaagatggtgagttcaaacgttattcacttgtcttta-aaacattcatttcatgattaactaatagaagcgaatgccactgaattct |
99 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33155987 |
ttaagaaccagaagaagatggtgagttcaaacgctattcacttgtcttttgaaacattcatttcatgattaactaatagaagcgaatgccactgaattct |
33155888 |
T |
|
| Q |
100 |
gatcatgttggaaaacaaacacgaagctttattcttctgcctgatctagctatactccattggtagcttatccatgatgcacaagttgttggttattctt |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33155887 |
gatcatgttggaaaacaaaca-gaagctttattcttctgcctgatctagctatactccattg----cttatccatgatgcacaagttgttggttattctt |
33155793 |
T |
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| Q |
200 |
tcaaatgatgtgatttaaaatgtcacctctatgttccacacctagaaattattttattatagtaaaattgctatattgtatat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33155792 |
tcaaatgatgtgatttaaaatgtcacctctatgttccacacctagaaattattttattatggtaaaattgctatattgtatat |
33155710 |
T |
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