View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_7 (Length: 674)
Name: NF1836_high_7
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 135 - 667
Target Start/End: Complemental strand, 4975695 - 4975164
Alignment:
| Q |
135 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
234 |
Q |
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||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
4975695 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4975596 |
T |
|
| Q |
235 |
attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
334 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975595 |
attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
4975496 |
T |
|
| Q |
335 |
ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975495 |
ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg |
4975396 |
T |
|
| Q |
435 |
atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagc |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975395 |
atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagt |
4975296 |
T |
|
| Q |
535 |
attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaac |
634 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4975295 |
attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaac |
4975197 |
T |
|
| Q |
635 |
aacaaattttatttaaccatcaggtctctgctc |
667 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
4975196 |
aacaaattttatttaaccatcaggtctctgctc |
4975164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 135 - 667
Target Start/End: Complemental strand, 4993603 - 4993072
Alignment:
| Q |
135 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
234 |
Q |
| |
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||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
4993603 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4993504 |
T |
|
| Q |
235 |
attatcaattcagtcggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
334 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993503 |
attatcaattgagtcggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttag |
4993404 |
T |
|
| Q |
335 |
ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993403 |
ttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttg |
4993304 |
T |
|
| Q |
435 |
atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagc |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993303 |
atataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaacccttcggttattctctcttccttttagt |
4993204 |
T |
|
| Q |
535 |
attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgatttcttttttaaac |
634 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4993203 |
attttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaac |
4993105 |
T |
|
| Q |
635 |
aacaaattttatttaaccatcaggtctctgctc |
667 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
4993104 |
aacaaattttatttaaccatcaggtctctgctc |
4993072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 4976663 - 4976574
Alignment:
| Q |
37 |
cacgatggcccactttgattttagtagatcgctgtaattttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
123 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |
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| T |
4976663 |
cacgatggtccactttaattttagtagatcgctgtaattttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4976574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 4994570 - 4994481
Alignment:
| Q |
37 |
cacgatggcccactttgattttagtagatcgctgtaattttaacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
123 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |
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| T |
4994570 |
cacgatggtccactttaattttagtagatcgctgtaattttaacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4994481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 625 - 667
Target Start/End: Original strand, 43312275 - 43312317
Alignment:
| Q |
625 |
ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
667 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
43312275 |
ttttttaaacaacaaattttatttaaccacctggtctctgctc |
43312317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 660
Target Start/End: Original strand, 10248185 - 10248220
Alignment:
| Q |
625 |
ttttttaaacaacaaattttatttaaccatcaggtc |
660 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
10248185 |
tttttgaaacaacaaattttatttaaccatcaggtc |
10248220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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