View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_87 (Length: 262)
Name: NF1836_high_87
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_87 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 1858601 - 1858840
Alignment:
| Q |
4 |
gagggtggggtttagttcatgttatgtgtattgttcgtcatcttcatcttaatcgtgccattttttaatcaaattctattattgttacaattgttgtcct |
103 |
Q |
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| T |
1858601 |
gagggtggggtttagttcatgttatgtgtattgttcgtcatcttcatcttaatcgtgctattttttaatcaaattatattattgttacaattgttgtact |
1858700 |
T |
|
| Q |
104 |
caatcgttcaacctccgtatcttgtctcgttgtcctcaatcgttctgcctctgtatcttatctcaaatctattctagaagaggttcttaatttacttcat |
203 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1858701 |
caatcgttctacctctgtatcttgtctcgttgtcctcaatcgttctgcctctgtatcttatctcaaatctattctagaagaggttcttaatttacttcat |
1858800 |
T |
|
| Q |
204 |
ctttcatattagtctgccattgttcaacattggtttagag |
243 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
1858801 |
ctttcatattagtttgccattgttcaacattggtttagag |
1858840 |
T |
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